FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6487, 329 aa
  1>>>pF1KB6487 329 - 329 aa - 329 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8158+/-0.00069; mu= 15.2524+/- 0.042
 mean_var=85.7786+/-17.484, 0's: 0 Z-trim(111.9): 30  B-trim: 490 in 1/52
 Lambda= 0.138479
 statistics sampled from 12731 (12761) to 12731 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.392), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS10661.1 KCTD13 gene_id:253980|Hs108|chr16      ( 329) 2182 445.1 3.7e-125
CCDS9128.1 KCTD10 gene_id:83892|Hs108|chr12        ( 313) 1418 292.4 3.2e-79
CCDS11227.1 TNFAIP1 gene_id:7126|Hs108|chr17       ( 316) 1356 280.0 1.7e-75


>>CCDS10661.1 KCTD13 gene_id:253980|Hs108|chr16           (329 aa)
 initn: 2182 init1: 2182 opt: 2182  Z-score: 2360.4  bits: 445.1 E(32554): 3.7e-125
Smith-Waterman score: 2182; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)

               10        20        30        40        50        60
pF1KB6 MSAEASGPAAAAAPSLEAPKPSGLEPGPAAYGLKPLTPNSKYVKLNVGGSLHYTTLRTLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSAEASGPAAAAAPSLEAPKPSGLEPGPAAYGLKPLTPNSKYVKLNVGGSLHYTTLRTLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GQDTMLKAMFSGRVEVLTDAGGWVLIDRSGRHFGTILNYLRDGSVPLPESTRELGELLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GQDTMLKAMFSGRVEVLTDAGGWVLIDRSGRHFGTILNYLRDGSVPLPESTRELGELLGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ARYYLVQGLIEDCQLALQQKRETLSPLCLIPMVTSPREEQQLLASTSKPVVKLLHNRSNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ARYYLVQGLIEDCQLALQQKRETLSPLCLIPMVTSPREEQQLLASTSKPVVKLLHNRSNN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KYSYTSTSDDNLLKNIELFDKLALRFHGRLLFLKDVLGDEICCWSFYGQGRKIAEVCCTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KYSYTSTSDDNLLKNIELFDKLALRFHGRLLFLKDVLGDEICCWSFYGQGRKIAEVCCTS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 IVYATEKKQTKVEFPEARIFEETLNILIYETPRGPDPALLEATGGAAGAGGAGRGEDEEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IVYATEKKQTKVEFPEARIFEETLNILIYETPRGPDPALLEATGGAAGAGGAGRGEDEEN
              250       260       270       280       290       300

              310       320         
pF1KB6 REHRVRRIHVRRHITHDERPHGQQIVFKD
       :::::::::::::::::::::::::::::
CCDS10 REHRVRRIHVRRHITHDERPHGQQIVFKD
              310       320         

>>CCDS9128.1 KCTD10 gene_id:83892|Hs108|chr12             (313 aa)
 initn: 898 init1: 763 opt: 1418  Z-score: 1535.8  bits: 292.4 E(32554): 3.2e-79
Smith-Waterman score: 1418; 72.4% identity (89.8% similar) in 294 aa overlap (33-324:24-313)

             10        20        30        40        50        60  
pF1KB6 AEASGPAAAAAPSLEAPKPSGLEPGPAAYGLKPLTPNSKYVKLNVGGSLHYTTLRTLTGQ
                                     .:  .:.::::::::::.:.:::..::: :
CCDS91        MEEMSGESVVSSAVPAAATRTTSFKGTSPSSKYVKLNVGGALYYTTMQTLTKQ
                      10        20        30        40        50   

             70        80        90       100       110       120  
pF1KB6 DTMLKAMFSGRVEVLTDAGGWVLIDRSGRHFGTILNYLRDGSVPLPESTRELGELLGEAR
       :::::::::::.:::::. ::.:::: :.::::::::::::.:::::: ::. :::.::.
CCDS91 DTMLKAMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGAVPLPESRREIEELLAEAK
            60        70        80        90       100       110   

            130       140       150       160       170       180  
pF1KB6 YYLVQGLIEDCQLALQQKRETLSPLCLIPMVTSPREEQQLLASTSKPVVKLLHNRSNNKY
       :::::::.:.:: :::.: .:  :.: .:..:: .:::.:.:...::.::::.:::::::
CCDS91 YYLVQGLVEECQAALQNK-DTYEPFCKVPVITSSKEEQKLIATSNKPAVKLLYNRSNNKY
           120       130        140       150       160       170  

            190       200       210       220       230       240  
pF1KB6 SYTSTSDDNLLKNIELFDKLALRFHGRLLFLKDVLGDEICCWSFYGQGRKIAEVCCTSIV
       ::::.::::.::::::::::.:::.::.::.:::.:::::::::::::::::::::::::
CCDS91 SYTSNSDDNMLKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKIAEVCCTSIV
            180       190       200       210       220       230  

            250       260       270         280       290       300
pF1KB6 YATEKKQTKVEFPEARIFEETLNILIYETP--RGPDPALLEATGGAAGAGGAGRGEDEEN
       :::::::::::::::::.:::::::.::.   :::: ::::::::::: .     ..:..
CCDS91 YATEKKQTKVEFPEARIYEETLNILLYEAQDGRGPDNALLEATGGAAGRSHHLDEDEERE
            240       250       260       270       280       290  

              310       320         
pF1KB6 REHRVRRIHVRRHITHDERPHGQQIVFKD
       : .::::::..:    :.: : .:     
CCDS91 RIERVRRIHIKRP---DDRAHLHQ     
            300          310        

>>CCDS11227.1 TNFAIP1 gene_id:7126|Hs108|chr17            (316 aa)
 initn: 1389 init1: 1343 opt: 1356  Z-score: 1468.8  bits: 280.0 E(32554): 1.7e-75
Smith-Waterman score: 1361; 64.4% identity (84.4% similar) in 326 aa overlap (6-329:2-316)

               10        20        30        40        50        60
pF1KB6 MSAEASGPAAAAAPSLEAPKPSGLEPGPAAYGLKPLTPNSKYVKLNVGGSLHYTTLRTLT
            :: .     :   :: ::.. :    ::     ..:::.:::::::.:::.:.::
CCDS11     MSGDTCLCPASGAKPKLSGFKGG----GL-----GNKYVQLNVGGSLYYTTVRALT
                   10        20                 30        40       

               70        80        90       100       110       120
pF1KB6 GQDTMLKAMFSGRVEVLTDAGGWVLIDRSGRHFGTILNYLRDGSVPLPESTRELGELLGE
        .:::::::::::.:::::  ::.:::: :.::::::::::: .. ::.. .:. ::..:
CCDS11 RHDTMLKAMFSGRMEVLTDKEGWILIDRCGKHFGTILNYLRDDTITLPQNRQEIKELMAE
        50        60        70        80        90       100       

              130       140       150       160       170       180
pF1KB6 ARYYLVQGLIEDCQLALQQKRETLSPLCLIPMVTSPREEQQLLASTSKPVVKLLHNRSNN
       :.:::.:::.. :: :::.:... .:.: ::..:: .::..:. :..:::::::.:::::
CCDS11 AKYYLIQGLVNMCQSALQDKKDSYQPVCNIPIITSLKEEERLIESSTKPVVKLLYNRSNN
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB6 KYSYTSTSDDNLLKNIELFDKLALRFHGRLLFLKDVLGDEICCWSFYGQGRKIAEVCCTS
       ::::::.:::.:::::::::::.:::.::.::.:::.:::::::::::::::.:::::::
CCDS11 KYSYTSNSDDHLLKNIELFDKLSLRFNGRVLFIKDVIGDEICCWSFYGQGRKLAEVCCTS
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB6 IVYATEKKQTKVEFPEARIFEETLNILIYETPRGPDPALLEATGGAAGAGGAGRGEDEEN
       :::::::::::::::::::.:::::.:.::::: :: .:::::  . . . :. .::::.
CCDS11 IVYATEKKQTKVEFPEARIYEETLNVLLYETPRVPDNSLLEAT--SRSRSQASPSEDEET
       230       240       250       260       270         280     

                310       320         
pF1KB6 RE--HRVRRIHVRRHITHDERPHGQQIVFKD
        :   :::::::.:. :.:.:  :.: . .:
CCDS11 FELRDRVRRIHVKRYSTYDDRQLGHQSTHRD
         290       300       310      




329 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:08:04 2016 done: Fri Nov  4 23:08:04 2016
 Total Scan time:  2.480 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]