Result of FASTA (ccds) for
pF1KB6486
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6486, 356 aa
1>>>pF1KB6486 356 - 356 aa - 356 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6613+/-0.000826; mu= 9.7002+/- 0.049
mean_var=83.3825+/-17.673, 0's: 0 Z-trim(108.3): 17 B-trim: 1028 in 2/50
Lambda= 0.140455
statistics sampled from 10106 (10117) to 10106 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.311), width: 16
Scan time: 2.830
The best scores are: opt bits E(32554)
CCDS47956.1 APTX gene_id:54840|Hs108|chr9 ( 342) 2322 480.1 1.2e-135
CCDS6532.1 APTX gene_id:54840|Hs108|chr9 ( 306) 2061 427.2 9e-120
CCDS75827.1 APTX gene_id:54840|Hs108|chr9 ( 288) 1669 347.8 6.9e-96
CCDS56568.1 APTX gene_id:54840|Hs108|chr9 ( 302) 1669 347.8 7.2e-96
>>CCDS47956.1 APTX gene_id:54840|Hs108|chr9 (342 aa)
initn: 2322 init1: 2322 opt: 2322 Z-score: 2548.8 bits: 480.1 E(32554): 1.2e-135
Smith-Waterman score: 2322; 100.0% identity (100.0% similar) in 342 aa overlap (15-356:1-342)
10 20 30 40 50 60
pF1KB6 MSNVNLSVSDFWRVMMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQ
::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQ
10 20 30 40
70 80 90 100 110 120
pF1KB6 LKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKN
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 PGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGH
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKH
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 MHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY
230 240 250 260 270 280
310 320 330 340 350
pF1KB6 FLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
290 300 310 320 330 340
>>CCDS6532.1 APTX gene_id:54840|Hs108|chr9 (306 aa)
initn: 2061 init1: 2061 opt: 2061 Z-score: 2263.8 bits: 427.2 E(32554): 9e-120
Smith-Waterman score: 2061; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KB6 MSNVNLSVSDFWRVMMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MSNVNLSVSDFWRVMMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 PGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 MHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 FLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
:::::
CCDS65 FLESQE
>>CCDS75827.1 APTX gene_id:54840|Hs108|chr9 (288 aa)
initn: 1956 init1: 1661 opt: 1669 Z-score: 1834.9 bits: 347.8 E(32554): 6.9e-96
Smith-Waterman score: 1852; 84.2% identity (84.2% similar) in 342 aa overlap (15-356:1-288)
10 20 30 40 50 60
pF1KB6 MSNVNLSVSDFWRVMMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQ
::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQ--
10 20 30 40
70 80 90 100 110 120
pF1KB6 LKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKN
::::::::
CCDS75 ----------------------------------------------------EFEEEAKN
50
130 140 150 160 170 180
pF1KB6 PGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGH
60 70 80 90 100 110
190 200 210 220 230 240
pF1KB6 WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKH
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB6 MHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY
180 190 200 210 220 230
310 320 330 340 350
pF1KB6 FLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
240 250 260 270 280
>>CCDS56568.1 APTX gene_id:54840|Hs108|chr9 (302 aa)
initn: 2050 init1: 1661 opt: 1669 Z-score: 1834.6 bits: 347.8 E(32554): 7.2e-96
Smith-Waterman score: 1946; 84.8% identity (84.8% similar) in 356 aa overlap (1-356:1-302)
10 20 30 40 50 60
pF1KB6 MSNVNLSVSDFWRVMMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MSNVNLSVSDFWRVMMRVCWLVRQDSRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQ--
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 LKAECNKGYVKVKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMVNELYPYIVEFEEEAKN
::::::::
CCDS56 ----------------------------------------------------EFEEEAKN
60
130 140 150 160 170 180
pF1KB6 PGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PGLETHRKRKRSGNSDSIERDAAQEAEAGTGLEPGSNSGQCSVPLKKGKDAPIKKESLGH
70 80 90 100 110 120
190 200 210 220 230 240
pF1KB6 WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKH
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB6 MHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MHTVGEKVIVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY
190 200 210 220 230 240
310 320 330 340 350
pF1KB6 FLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FLESQAVIEMVQEAGRVTVRDGMPELLKLPLRCHECQQLLPSIPQLKEHLRKHWTQ
250 260 270 280 290 300
356 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:07:53 2016 done: Sat Nov 5 04:07:53 2016
Total Scan time: 2.830 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]