Result of FASTA (omim) for
pF1KB6482
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6482, 356 aa
1>>>pF1KB6482 356 - 356 aa - 356 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6168+/-0.000317; mu= 6.7420+/- 0.020
mean_var=200.5092+/-40.258, 0's: 0 Z-trim(123.0): 82 B-trim: 574 in 1/53
Lambda= 0.090575
statistics sampled from 41832 (42051) to 41832 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.493), width: 16
Scan time: 8.620
The best scores are: opt bits E(85289)
NP_002494 (OMIM: 604495) NF-kappa-B inhibitor beta ( 356) 2436 330.4 3.8e-90
XP_006723290 (OMIM: 604495) PREDICTED: NF-kappa-B ( 351) 1889 258.9 1.2e-68
XP_006723289 (OMIM: 604495) PREDICTED: NF-kappa-B ( 324) 1876 257.2 3.8e-68
NP_001230045 (OMIM: 604495) NF-kappa-B inhibitor b ( 270) 1831 251.2 2e-66
NP_004547 (OMIM: 604548) NF-kappa-B inhibitor epsi ( 500) 372 60.8 7.4e-09
XP_011538132 (OMIM: 164012,615577) PREDICTED: nucl ( 755) 280 49.0 4.1e-05
XP_011538133 (OMIM: 164012,615577) PREDICTED: nucl ( 755) 280 49.0 4.1e-05
NP_001309864 (OMIM: 164012,615577) nuclear factor ( 858) 280 49.1 4.4e-05
NP_001248332 (OMIM: 164012,615577) nuclear factor ( 899) 280 49.1 4.6e-05
NP_002493 (OMIM: 164012,615577) nuclear factor NF- ( 899) 280 49.1 4.6e-05
NP_001275653 (OMIM: 164012,615577) nuclear factor ( 899) 280 49.1 4.6e-05
NP_001309863 (OMIM: 164012,615577) nuclear factor ( 900) 280 49.1 4.6e-05
NP_001070962 (OMIM: 164012,615577) nuclear factor ( 900) 280 49.1 4.6e-05
XP_016871767 (OMIM: 164012,615577) PREDICTED: nucl (1081) 280 49.2 5.2e-05
NP_065390 (OMIM: 164008,612132) NF-kappa-B inhibit ( 317) 263 46.4 0.0001
XP_016882599 (OMIM: 109560) PREDICTED: B-cell lymp ( 356) 237 43.0 0.0012
XP_011525502 (OMIM: 109560) PREDICTED: B-cell lymp ( 378) 237 43.1 0.0012
XP_016882598 (OMIM: 109560) PREDICTED: B-cell lymp ( 434) 237 43.1 0.0014
NP_005169 (OMIM: 109560) B-cell lymphoma 3 protein ( 454) 237 43.2 0.0014
XP_011525499 (OMIM: 109560) PREDICTED: B-cell lymp ( 539) 237 43.2 0.0016
XP_011525500 (OMIM: 109560) PREDICTED: B-cell lymp ( 696) 237 43.3 0.0019
NP_065815 (OMIM: 612184) caskin-1 [Homo sapiens] (1431) 231 42.9 0.0054
XP_011530310 (OMIM: 164011,616576) PREDICTED: nucl ( 916) 221 41.4 0.0097
>>NP_002494 (OMIM: 604495) NF-kappa-B inhibitor beta iso (356 aa)
initn: 2436 init1: 2436 opt: 2436 Z-score: 1739.5 bits: 330.4 E(85289): 3.8e-90
Smith-Waterman score: 2436; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)
10 20 30 40 50 60
pF1KB6 MAGVACLGKAADADEWCDSGLGSLGPDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAGVACLGKAADADEWCDSGLGSLGPDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ALHLAVIHQHEPFLDFLLGFSAGTEYMDLQNDLGQTALHLAAILGETSTVEKLYAAGAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ALHLAVIHQHEPFLDFLLGFSAGTEYMDLQNDLGQTALHLAAILGETSTVEKLYAAGAGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 CVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 PDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 GRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAHGAPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAHGAPE
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 PEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
310 320 330 340 350
>>XP_006723290 (OMIM: 604495) PREDICTED: NF-kappa-B inhi (351 aa)
initn: 1889 init1: 1889 opt: 1889 Z-score: 1353.3 bits: 258.9 E(85289): 1.2e-68
Smith-Waterman score: 1889; 100.0% identity (100.0% similar) in 279 aa overlap (78-356:73-351)
50 60 70 80 90 100
pF1KB6 PLVFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGTEYMDLQNDLGQTALHLAAILGET
::::::::::::::::::::::::::::::
XP_006 GSGRDRAQNYNSQQTLRPQTRFRTTPRAPQLGFSAGTEYMDLQNDLGQTALHLAAILGET
50 60 70 80 90 100
110 120 130 140 150 160
pF1KB6 STVEKLYAAGAGLCVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 STVEKLYAAGAGLCVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPD
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB6 RTPDTNHTPVALYPDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RTPDTNHTPVALYPDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLR
170 180 190 200 210 220
230 240 250 260 270 280
pF1KB6 DAGADLDKPEPTCGRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DAGADLDKPEPTCGRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNP
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB6 ILARLLRAHGAPEPEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ILARLLRAHGAPEPEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASK
290 300 310 320 330 340
350
pF1KB6 PLPDDPRPV
:::::::::
XP_006 PLPDDPRPV
350
>>XP_006723289 (OMIM: 604495) PREDICTED: NF-kappa-B inhi (324 aa)
initn: 1876 init1: 1876 opt: 1876 Z-score: 1344.5 bits: 257.2 E(85289): 3.8e-68
Smith-Waterman score: 1876; 100.0% identity (100.0% similar) in 277 aa overlap (80-356:48-324)
50 60 70 80 90 100
pF1KB6 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGTEYMDLQNDLGQTALHLAAILGETST
::::::::::::::::::::::::::::::
XP_006 PEDLGWARSWARGCRGLPSSSATSLRMGTRFSAGTEYMDLQNDLGQTALHLAAILGETST
20 30 40 50 60 70
110 120 130 140 150 160
pF1KB6 VEKLYAAGAGLCVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPDRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VEKLYAAGAGLCVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPDRT
80 90 100 110 120 130
170 180 190 200 210 220
pF1KB6 PDTNHTPVALYPDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLRDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PDTNHTPVALYPDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLRDA
140 150 160 170 180 190
230 240 250 260 270 280
pF1KB6 GADLDKPEPTCGRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNPIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GADLDKPEPTCGRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNPIL
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB6 ARLLRAHGAPEPEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASKPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ARLLRAHGAPEPEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASKPL
260 270 280 290 300 310
350
pF1KB6 PDDPRPV
:::::::
XP_006 PDDPRPV
320
>>NP_001230045 (OMIM: 604495) NF-kappa-B inhibitor beta (270 aa)
initn: 1831 init1: 1831 opt: 1831 Z-score: 1313.7 bits: 251.2 E(85289): 2e-66
Smith-Waterman score: 1831; 100.0% identity (100.0% similar) in 270 aa overlap (87-356:1-270)
60 70 80 90 100 110
pF1KB6 DGDTALHLAVIHQHEPFLDFLLGFSAGTEYMDLQNDLGQTALHLAAILGETSTVEKLYAA
::::::::::::::::::::::::::::::
NP_001 MDLQNDLGQTALHLAAILGETSTVEKLYAA
10 20 30
120 130 140 150 160 170
pF1KB6 GAGLCVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAGLCVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTP
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB6 VALYPDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VALYPDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKP
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB6 EPTCGRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPTCGRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAH
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB6 GAPEPEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAPEPEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
220 230 240 250 260 270
>>NP_004547 (OMIM: 604548) NF-kappa-B inhibitor epsilon (500 aa)
initn: 464 init1: 200 opt: 372 Z-score: 280.0 bits: 60.8 E(85289): 7.4e-09
Smith-Waterman score: 438; 37.2% identity (55.9% similar) in 288 aa overlap (12-284:202-447)
10 20 30
pF1KB6 MAGVACLGKAADAD-EWCDSGLGSL----------GPDAAA
::: : :: :: ::.:
NP_004 TSAPASGPSDGSPQPCTHPPGPVKEPQEKEDADGERADSTYGSSSLTYTLSLLGGPEAED
180 190 200 210 220 230
40 50 60 70 80
pF1KB6 PGG----PGLGAELGPGLSWAPLVFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGTEY
:. : .:: :.: : . :..::::: .::::::. : :.. :
NP_004 PAPRLPLPHVGA-LSPQQLEA---LTYISEDGDTLVHLAVIHEAPAVLLCCLAL-LPQEV
240 250 260 270 280
90 100 110 120 130 140
pF1KB6 MDLQNDLGQTALHLAAILGETSTVEKLYAAGAGLCVAERRGHTALHLACRVGAHACARAL
.:.::.: :::::::. : . ..:. : ::. . .:.: ::::.::. :::: :
NP_004 LDIQNNLYQTALHLAVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLACARCL
290 300 310 320 330 340
150 160 170 180 190 200
pF1KB6 LQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALYPDSDLEKEEEESEEDWKLQLEAENYE
:. ::. : : :.:. :.:. .:..
NP_004 LEGRPE-------------PGR--GTSHS----------------------LDLQLQNWQ
350 360
210 220 230 240 250 260
pF1KB6 GHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTCGRSPLHLAVEAQAADVLELLLRAGAN
: . ::.:...:. ...:: :::.: : : :.. ::::::.: ....::.:::.
NP_004 GLACLHIATLQKNQPLMELLLRNGADIDVQEGTSGKTALHLAVETQERGLVQFLLQAGAQ
370 380 390 400 410 420
270 280 290 300 310 320
pF1KB6 PAARMYGGRTPLGSAMLRPNPILARLLRAHGAPEPEGEDEKSGPCSSSSDSDSGDEGDEY
::: .: ::: : :
NP_004 VDARMLNGCTPLHLAAGRGLMGISSTLCKAGADSLLRNVEDETPQDLTEESLVLLPFDDL
430 440 450 460 470 480
>>XP_011538132 (OMIM: 164012,615577) PREDICTED: nuclear (755 aa)
initn: 394 init1: 151 opt: 280 Z-score: 212.8 bits: 49.0 E(85289): 4.1e-05
Smith-Waterman score: 379; 34.0% identity (51.7% similar) in 300 aa overlap (56-347:341-596)
30 40 50 60 70 80
pF1KB6 PDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDTALHLAVIHQHEPFLD---FLLGFSA
:.::: ::::.:: . .. ... .
XP_011 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
320 330 340 350 360 370
90 100 110 120 130 140
pF1KB6 GTEYMDLQNDLGQTALHLAAILGETSTVEKLYAAGAGLCVAERRGHTALHLACRVGAHA-
..: : : :: ::::.: :.::.: : .:: . .:.: .:.::: :.:: :
XP_011 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
380 390 400 410 420 430
150 160 170 180 190 200
pF1KB6 -CARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALYPDSDLEKEEEESEEDWKLQL
::::: .: .:. : :
XP_011 ELLRALLQ---------------SGAPAVPQLLHMP------------------------
440 450
210 220 230 240 250
pF1KB6 EAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTCGRSPLHLAVEAQAAD-VLEL
..:: :.:.:: .. : . :: :.::... : ::. ::::.: . : .:
XP_011 ---DFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHL
460 470 480 490 500
260 270 280 290 300 310
pF1KB6 LLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAHGAPEPEGEDEKSGPCSS--SSDS
. . :: :: ..: ::: : : :.::: :: ..: : : .:::
XP_011 VTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDS
510 520 530 540 550 560
320 330 340 350
pF1KB6 DSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
:: .:: : : . : :..: : : ..:
XP_011 DSDSEGPEKD--TRSSFRGHTPLDLTCSTKVKTLLLNAAQNTMEPPLTPPSPAGPGLSLG
570 580 590 600 610 620
>>XP_011538133 (OMIM: 164012,615577) PREDICTED: nuclear (755 aa)
initn: 394 init1: 151 opt: 280 Z-score: 212.8 bits: 49.0 E(85289): 4.1e-05
Smith-Waterman score: 379; 34.0% identity (51.7% similar) in 300 aa overlap (56-347:341-596)
30 40 50 60 70 80
pF1KB6 PDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDTALHLAVIHQHEPFLD---FLLGFSA
:.::: ::::.:: . .. ... .
XP_011 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
320 330 340 350 360 370
90 100 110 120 130 140
pF1KB6 GTEYMDLQNDLGQTALHLAAILGETSTVEKLYAAGAGLCVAERRGHTALHLACRVGAHA-
..: : : :: ::::.: :.::.: : .:: . .:.: .:.::: :.:: :
XP_011 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
380 390 400 410 420 430
150 160 170 180 190 200
pF1KB6 -CARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALYPDSDLEKEEEESEEDWKLQL
::::: .: .:. : :
XP_011 ELLRALLQ---------------SGAPAVPQLLHMP------------------------
440 450
210 220 230 240 250
pF1KB6 EAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTCGRSPLHLAVEAQAAD-VLEL
..:: :.:.:: .. : . :: :.::... : ::. ::::.: . : .:
XP_011 ---DFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHL
460 470 480 490 500
260 270 280 290 300 310
pF1KB6 LLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAHGAPEPEGEDEKSGPCSS--SSDS
. . :: :: ..: ::: : : :.::: :: ..: : : .:::
XP_011 VTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDS
510 520 530 540 550 560
320 330 340 350
pF1KB6 DSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
:: .:: : : . : :..: : : ..:
XP_011 DSDSEGPEKD--TRSSFRGHTPLDLTCSTKVKTLLLNAAQNTMEPPLTPPSPAGPGLSLG
570 580 590 600 610 620
>>NP_001309864 (OMIM: 164012,615577) nuclear factor NF-k (858 aa)
initn: 394 init1: 151 opt: 280 Z-score: 212.2 bits: 49.1 E(85289): 4.4e-05
Smith-Waterman score: 379; 34.0% identity (51.7% similar) in 300 aa overlap (56-347:444-699)
30 40 50 60 70 80
pF1KB6 PDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDTALHLAVIHQHEPFLD---FLLGFSA
:.::: ::::.:: . .. ... .
NP_001 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
420 430 440 450 460 470
90 100 110 120 130 140
pF1KB6 GTEYMDLQNDLGQTALHLAAILGETSTVEKLYAAGAGLCVAERRGHTALHLACRVGAHA-
..: : : :: ::::.: :.::.: : .:: . .:.: .:.::: :.:: :
NP_001 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
480 490 500 510 520 530
150 160 170 180 190 200
pF1KB6 -CARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALYPDSDLEKEEEESEEDWKLQL
::::: .: .:. : :
NP_001 ELLRALLQ---------------SGAPAVPQLLHMP------------------------
540 550
210 220 230 240 250
pF1KB6 EAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTCGRSPLHLAVEAQAAD-VLEL
..:: :.:.:: .. : . :: :.::... : ::. ::::.: . : .:
NP_001 ---DFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHL
560 570 580 590 600 610
260 270 280 290 300 310
pF1KB6 LLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAHGAPEPEGEDEKSGPCSS--SSDS
. . :: :: ..: ::: : : :.::: :: ..: : : .:::
NP_001 VTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDS
620 630 640 650 660 670
320 330 340 350
pF1KB6 DSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
:: .:: : : . : :..: : : ..:
NP_001 DSDSEGPEKD--TRSSFRGHTPLDLTCSTKVKTLLLNAAQNTMEPPLTPPSPAGPGLSLG
680 690 700 710 720
>>NP_001248332 (OMIM: 164012,615577) nuclear factor NF-k (899 aa)
initn: 394 init1: 151 opt: 280 Z-score: 211.9 bits: 49.1 E(85289): 4.6e-05
Smith-Waterman score: 379; 34.0% identity (51.7% similar) in 300 aa overlap (56-347:486-741)
30 40 50 60 70 80
pF1KB6 PDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDTALHLAVIHQHEPFLD---FLLGFSA
:.::: ::::.:: . .. ... .
NP_001 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
460 470 480 490 500 510
90 100 110 120 130 140
pF1KB6 GTEYMDLQNDLGQTALHLAAILGETSTVEKLYAAGAGLCVAERRGHTALHLACRVGAHA-
..: : : :: ::::.: :.::.: : .:: . .:.: .:.::: :.:: :
NP_001 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
520 530 540 550 560 570
150 160 170 180 190 200
pF1KB6 -CARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALYPDSDLEKEEEESEEDWKLQL
::::: .: .:. : :
NP_001 ELLRALLQ---------------SGAPAVPQLLHMP------------------------
580 590
210 220 230 240 250
pF1KB6 EAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTCGRSPLHLAVEAQAAD-VLEL
..:: :.:.:: .. : . :: :.::... : ::. ::::.: . : .:
NP_001 ---DFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHL
600 610 620 630 640 650
260 270 280 290 300 310
pF1KB6 LLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAHGAPEPEGEDEKSGPCSS--SSDS
. . :: :: ..: ::: : : :.::: :: ..: : : .:::
NP_001 VTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDS
660 670 680 690 700 710
320 330 340 350
pF1KB6 DSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
:: .:: : : . : :..: : : ..:
NP_001 DSDSEGPEKD--TRSSFRGHTPLDLTCSTKVKTLLLNAAQNTMEPPLTPPSPAGPGLSLG
720 730 740 750 760 770
>>NP_002493 (OMIM: 164012,615577) nuclear factor NF-kapp (899 aa)
initn: 394 init1: 151 opt: 280 Z-score: 211.9 bits: 49.1 E(85289): 4.6e-05
Smith-Waterman score: 379; 34.0% identity (51.7% similar) in 300 aa overlap (56-347:486-741)
30 40 50 60 70 80
pF1KB6 PDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDTALHLAVIHQHEPFLD---FLLGFSA
:.::: ::::.:: . .. ... .
NP_002 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
460 470 480 490 500 510
90 100 110 120 130 140
pF1KB6 GTEYMDLQNDLGQTALHLAAILGETSTVEKLYAAGAGLCVAERRGHTALHLACRVGAHA-
..: : : :: ::::.: :.::.: : .:: . .:.: .:.::: :.:: :
NP_002 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
520 530 540 550 560 570
150 160 170 180 190 200
pF1KB6 -CARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALYPDSDLEKEEEESEEDWKLQL
::::: .: .:. : :
NP_002 ELLRALLQ---------------SGAPAVPQLLHMP------------------------
580 590
210 220 230 240 250
pF1KB6 EAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTCGRSPLHLAVEAQAAD-VLEL
..:: :.:.:: .. : . :: :.::... : ::. ::::.: . : .:
NP_002 ---DFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHL
600 610 620 630 640 650
260 270 280 290 300 310
pF1KB6 LLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAHGAPEPEGEDEKSGPCSS--SSDS
. . :: :: ..: ::: : : :.::: :: ..: : : .:::
NP_002 VTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDS
660 670 680 690 700 710
320 330 340 350
pF1KB6 DSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
:: .:: : : . : :..: : : ..:
NP_002 DSDSEGPEKD--TRSSFRGHTPLDLTCSTKVKTLLLNAAQNTMEPPLTPPSPAGPGLSLG
720 730 740 750 760 770
356 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:59:49 2016 done: Fri Nov 4 20:59:51 2016
Total Scan time: 8.620 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]