FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6482, 356 aa
  1>>>pF1KB6482 356 - 356 aa - 356 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1619+/-0.000757; mu= 9.6894+/- 0.046
 mean_var=165.3572+/-33.355, 0's: 0 Z-trim(115.4): 70  B-trim: 112 in 1/50
 Lambda= 0.099738
 statistics sampled from 15905 (15990) to 15905 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.491), width:  16
 Scan time:  3.370

The best scores are:                                      opt bits E(32554)
CCDS12524.1 NFKBIB gene_id:4793|Hs108|chr19        ( 356) 2436 361.9 4.8e-100
CCDS74362.1 NFKBIB gene_id:4793|Hs108|chr19        ( 270) 1831 274.7 6.3e-74


>>CCDS12524.1 NFKBIB gene_id:4793|Hs108|chr19             (356 aa)
 initn: 2436 init1: 2436 opt: 2436  Z-score: 1909.7  bits: 361.9 E(32554): 4.8e-100
Smith-Waterman score: 2436; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)

               10        20        30        40        50        60
pF1KB6 MAGVACLGKAADADEWCDSGLGSLGPDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAGVACLGKAADADEWCDSGLGSLGPDAAAPGGPGLGAELGPGLSWAPLVFGYVTEDGDT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ALHLAVIHQHEPFLDFLLGFSAGTEYMDLQNDLGQTALHLAAILGETSTVEKLYAAGAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ALHLAVIHQHEPFLDFLLGFSAGTEYMDLQNDLGQTALHLAAILGETSTVEKLYAAGAGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 CVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTPVALY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKPEPTC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAHGAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAHGAPE
              250       260       270       280       290       300

              310       320       330       340       350      
pF1KB6 PEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
              310       320       330       340       350      

>>CCDS74362.1 NFKBIB gene_id:4793|Hs108|chr19             (270 aa)
 initn: 1831 init1: 1831 opt: 1831  Z-score: 1440.7  bits: 274.7 E(32554): 6.3e-74
Smith-Waterman score: 1831; 100.0% identity (100.0% similar) in 270 aa overlap (87-356:1-270)

         60        70        80        90       100       110      
pF1KB6 DGDTALHLAVIHQHEPFLDFLLGFSAGTEYMDLQNDLGQTALHLAAILGETSTVEKLYAA
                                     ::::::::::::::::::::::::::::::
CCDS74                               MDLQNDLGQTALHLAAILGETSTVEKLYAA
                                             10        20        30

        120       130       140       150       160       170      
pF1KB6 GAGLCVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GAGLCVAERRGHTALHLACRVGAHACARALLQPRPRRPREAPDTYLAQGPDRTPDTNHTP
               40        50        60        70        80        90

        180       190       200       210       220       230      
pF1KB6 VALYPDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VALYPDSDLEKEEEESEEDWKLQLEAENYEGHTPLHVAVIHKDVEMVRLLRDAGADLDKP
              100       110       120       130       140       150

        240       250       260       270       280       290      
pF1KB6 EPTCGRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EPTCGRSPLHLAVEAQAADVLELLLRAGANPAARMYGGRTPLGSAMLRPNPILARLLRAH
              160       170       180       190       200       210

        300       310       320       330       340       350      
pF1KB6 GAPEPEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 GAPEPEGEDEKSGPCSSSSDSDSGDEGDEYDDIVVHSSRSQTRLPPTPASKPLPDDPRPV
              220       230       240       250       260       270




356 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:59:48 2016 done: Fri Nov  4 20:59:49 2016
 Total Scan time:  3.370 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]