Result of FASTA (omim) for
pF1KB6479
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6479, 327 aa
1>>>pF1KB6479 327 - 327 aa - 327 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0273+/-0.000366; mu= 17.4969+/- 0.023
mean_var=67.3174+/-13.699, 0's: 0 Z-trim(112.9): 16 B-trim: 15 in 1/53
Lambda= 0.156319
statistics sampled from 22016 (22025) to 22016 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.258), width: 16
Scan time: 7.140
The best scores are: opt bits E(85289)
XP_006720618 (OMIM: 252010,606934) PREDICTED: comp ( 327) 2215 508.5 7.6e-144
NP_057097 (OMIM: 252010,606934) complex I intermed ( 327) 2215 508.5 7.6e-144
XP_011519960 (OMIM: 252010,606934) PREDICTED: comp ( 327) 2215 508.5 7.6e-144
XP_011519961 (OMIM: 252010,606934) PREDICTED: comp ( 293) 1893 435.9 5.1e-122
XP_016877782 (OMIM: 252010,606934) PREDICTED: comp ( 261) 1721 397.0 2.2e-110
>>XP_006720618 (OMIM: 252010,606934) PREDICTED: complex (327 aa)
initn: 2215 init1: 2215 opt: 2215 Z-score: 2703.4 bits: 508.5 E(85289): 7.6e-144
Smith-Waterman score: 2215; 99.7% identity (100.0% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KB6 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 MFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDF
250 260 270 280 290 300
310 320
pF1KB6 IGVFTDPAHTEEFGYENSPELNPRLFK
:::::::::::::.:::::::::::::
XP_006 IGVFTDPAHTEEFAYENSPELNPRLFK
310 320
>>NP_057097 (OMIM: 252010,606934) complex I intermediate (327 aa)
initn: 2215 init1: 2215 opt: 2215 Z-score: 2703.4 bits: 508.5 E(85289): 7.6e-144
Smith-Waterman score: 2215; 99.7% identity (100.0% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KB6 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 MFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDF
250 260 270 280 290 300
310 320
pF1KB6 IGVFTDPAHTEEFGYENSPELNPRLFK
:::::::::::::.:::::::::::::
NP_057 IGVFTDPAHTEEFAYENSPELNPRLFK
310 320
>>XP_011519960 (OMIM: 252010,606934) PREDICTED: complex (327 aa)
initn: 2215 init1: 2215 opt: 2215 Z-score: 2703.4 bits: 508.5 E(85289): 7.6e-144
Smith-Waterman score: 2215; 99.7% identity (100.0% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KB6 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 MFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDF
250 260 270 280 290 300
310 320
pF1KB6 IGVFTDPAHTEEFGYENSPELNPRLFK
:::::::::::::.:::::::::::::
XP_011 IGVFTDPAHTEEFAYENSPELNPRLFK
310 320
>>XP_011519961 (OMIM: 252010,606934) PREDICTED: complex (293 aa)
initn: 1914 init1: 1893 opt: 1893 Z-score: 2311.6 bits: 435.9 E(85289): 5.1e-122
Smith-Waterman score: 1893; 99.6% identity (99.6% similar) in 280 aa overlap (1-280:1-280)
10 20 30 40 50 60
pF1KB6 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 MFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDF
:::::::::::::::::::::::::::::::::::::: :
XP_011 MFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKDSPWLIKWMVHSSWR
250 260 270 280 290
310 320
pF1KB6 IGVFTDPAHTEEFGYENSPELNPRLFK
>>XP_016877782 (OMIM: 252010,606934) PREDICTED: complex (261 aa)
initn: 1742 init1: 1721 opt: 1721 Z-score: 2102.7 bits: 397.0 E(85289): 2.2e-110
Smith-Waterman score: 1721; 98.1% identity (98.8% similar) in 259 aa overlap (1-259:1-259)
10 20 30 40 50 60
pF1KB6 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 MFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDF
::::::::::::: . :.
XP_016 MFTRGGPYWQEVKATLLKLVS
250 260
327 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:07:26 2016 done: Fri Nov 4 23:07:27 2016
Total Scan time: 7.140 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]