FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6479, 327 aa
  1>>>pF1KB6479 327 - 327 aa - 327 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4597+/-0.000862; mu= 14.8414+/- 0.052
 mean_var=61.9970+/-12.511, 0's: 0 Z-trim(105.8): 20  B-trim: 4 in 1/49
 Lambda= 0.162888
 statistics sampled from 8605 (8609) to 8605 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.264), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS10075.1 NDUFAF1 gene_id:51103|Hs108|chr15      ( 327) 2215 529.1 1.9e-150


>>CCDS10075.1 NDUFAF1 gene_id:51103|Hs108|chr15           (327 aa)
 initn: 2215 init1: 2215 opt: 2215  Z-score: 2814.5  bits: 529.1 E(32554): 1.9e-150
Smith-Waterman score: 2215; 99.7% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KB6 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GDHQKEVALDITSSEEKPDVSFDKAIRDEAIYHFRLLKDEIVDHWRGPEGHPLHEVLLEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 MFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MFTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDF
              250       260       270       280       290       300

              310       320       
pF1KB6 IGVFTDPAHTEEFGYENSPELNPRLFK
       :::::::::::::.:::::::::::::
CCDS10 IGVFTDPAHTEEFAYENSPELNPRLFK
              310       320       




327 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:07:25 2016 done: Fri Nov  4 23:07:26 2016
 Total Scan time:  1.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]