Result of FASTA (ccds) for
pF1KB6454
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6454, 350 aa
1>>>pF1KB6454 350 - 350 aa - 350 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6492+/-0.000918; mu= 13.8722+/- 0.055
mean_var=61.4022+/-12.090, 0's: 0 Z-trim(105.0): 16 B-trim: 6 in 1/49
Lambda= 0.163675
statistics sampled from 8177 (8181) to 8177 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.251), width: 16
Scan time: 2.690
The best scores are: opt bits E(32554)
CCDS42797.1 NIF3L1 gene_id:60491|Hs108|chr2 ( 350) 2279 546.8 1e-155
CCDS46485.1 NIF3L1 gene_id:60491|Hs108|chr2 ( 377) 2279 546.8 1.1e-155
CCDS46486.1 NIF3L1 gene_id:60491|Hs108|chr2 ( 285) 1421 344.2 8.1e-95
>>CCDS42797.1 NIF3L1 gene_id:60491|Hs108|chr2 (350 aa)
initn: 2279 init1: 2279 opt: 2279 Z-score: 2909.2 bits: 546.8 E(32554): 1e-155
Smith-Waterman score: 2279; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)
10 20 30 40 50 60
pF1KB6 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 CTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLDKVMSAVKGIDGVSVTSFSARTGNEEQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLDKVMSAVKGIDGVSVTSFSARTGNEEQT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RINLNCTQKALMQVVDFLSRNKQLYQKTEILSLEKPLLLHTGMGRLCTLDESVSLATMID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RINLNCTQKALMQVVDFLSRNKQLYQKTEILSLEKPLLLHTGMGRLCTLDESVSLATMID
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 RIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQGVEADLYLTGEMSHHDTLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQGVEADLYLTGEMSHHDTLDA
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 ASQGINVILCEHSNTERGFLSDLRDMLDSHLENKINIILSETDRDPLQVV
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ASQGINVILCEHSNTERGFLSDLRDMLDSHLENKINIILSETDRDPLQVV
310 320 330 340 350
>>CCDS46485.1 NIF3L1 gene_id:60491|Hs108|chr2 (377 aa)
initn: 2279 init1: 2279 opt: 2279 Z-score: 2908.7 bits: 546.8 E(32554): 1.1e-155
Smith-Waterman score: 2279; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:28-377)
10 20 30
pF1KB6 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSP
:::::::::::::::::::::::::::::::::
CCDS46 MLSSCVRPVPTTVRFVDSLICNSSRSFMDLKALLSSLNDFASLSFAESWDNVGLLVEPSP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 PHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLVIRALENR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLVIRALENR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 VGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLD
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 KVMSAVKGIDGVSVTSFSARTGNEEQTRINLNCTQKALMQVVDFLSRNKQLYQKTEILSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KVMSAVKGIDGVSVTSFSARTGNEEQTRINLNCTQKALMQVVDFLSRNKQLYQKTEILSL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 EKPLLLHTGMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EKPLLLHTGMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB6 SGSSVLQGVEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGFLSDLRDMLDSHLEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SGSSVLQGVEADLYLTGEMSHHDTLDAASQGINVILCEHSNTERGFLSDLRDMLDSHLEN
310 320 330 340 350 360
340 350
pF1KB6 KINIILSETDRDPLQVV
:::::::::::::::::
CCDS46 KINIILSETDRDPLQVV
370
>>CCDS46486.1 NIF3L1 gene_id:60491|Hs108|chr2 (285 aa)
initn: 1442 init1: 1421 opt: 1421 Z-score: 1815.7 bits: 344.2 E(32554): 8.1e-95
Smith-Waterman score: 1421; 99.5% identity (99.5% similar) in 217 aa overlap (1-217:28-244)
10 20 30
pF1KB6 MDLKALLSSLNDFASLSFAESWDNVGLLVEPSP
:::::::::::::::::::::::::::::::::
CCDS46 MLSSCVRPVPTTVRFVDSLICNSSRSFMDLKALLSSLNDFASLSFAESWDNVGLLVEPSP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 PHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLVIRALENR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLVIRALENR
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB6 VGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNYPTEGNHRVEFNVNYTQDLD
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB6 KVMSAVKGIDGVSVTSFSARTGNEEQTRINLNCTQKALMQVVDFLSRNKQLYQKTEILSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KVMSAVKGIDGVSVTSFSARTGNEEQTRINLNCTQKALMQVVDFLSRNKQLYQKTEILSL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB6 EKPLLLHTGMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAG
:: :
CCDS46 EKSLKSKSWPCVLVLGAAFCRVLRLTFTSQVRCPIMILWMLLPKE
250 260 270 280
350 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:01:20 2016 done: Fri Nov 4 23:01:21 2016
Total Scan time: 2.690 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]