Result of FASTA (omim) for
pF1KB6427
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6427, 306 aa
1>>>pF1KB6427 306 - 306 aa - 306 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8020+/-0.000286; mu= 19.6427+/- 0.018
mean_var=77.2136+/-14.942, 0's: 0 Z-trim(119.3): 289 B-trim: 21 in 1/55
Lambda= 0.145958
statistics sampled from 32781 (33097) to 32781 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.388), width: 16
Scan time: 7.120
The best scores are: opt bits E(85289)
NP_001188281 (OMIM: 108361) asialoglycoprotein rec ( 306) 2175 466.8 2.4e-131
XP_016880141 (OMIM: 108361) PREDICTED: asialoglyco ( 311) 2155 462.6 4.6e-130
NP_550434 (OMIM: 108361) asialoglycoprotein recept ( 311) 2155 462.6 4.6e-130
XP_016880142 (OMIM: 108361) PREDICTED: asialoglyco ( 311) 2155 462.6 4.6e-130
NP_001172 (OMIM: 108361) asialoglycoprotein recept ( 311) 2155 462.6 4.6e-130
XP_006721589 (OMIM: 108361) PREDICTED: asialoglyco ( 287) 1899 408.6 7.3e-114
NP_550435 (OMIM: 108361) asialoglycoprotein recept ( 287) 1899 408.6 7.3e-114
XP_005256705 (OMIM: 108361) PREDICTED: asialoglyco ( 287) 1899 408.6 7.3e-114
NP_550436 (OMIM: 108361) asialoglycoprotein recept ( 292) 1879 404.4 1.4e-112
XP_016880140 (OMIM: 108361) PREDICTED: asialoglyco ( 292) 1879 404.4 1.4e-112
XP_011522167 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 1749 377.1 2.4e-104
XP_011522168 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 1749 377.1 2.4e-104
XP_011522165 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 1749 377.1 2.4e-104
XP_011522166 (OMIM: 108361) PREDICTED: asialoglyco ( 318) 1635 353.1 4.2e-97
XP_011522164 (OMIM: 108361) PREDICTED: asialoglyco ( 410) 1635 353.2 5.1e-97
XP_006721587 (OMIM: 108361) PREDICTED: asialoglyco ( 248) 1620 349.8 3.2e-96
XP_011522163 (OMIM: 108360) PREDICTED: asialoglyco ( 291) 1228 267.4 2.5e-71
NP_001662 (OMIM: 108360) asialoglycoprotein recept ( 291) 1228 267.4 2.5e-71
NP_001184145 (OMIM: 108360) asialoglycoprotein rec ( 252) 1055 230.9 2.1e-60
NP_001316999 (OMIM: 605999) C-type lectin domain f ( 289) 1051 230.1 4.1e-60
NP_006335 (OMIM: 605999) C-type lectin domain fami ( 292) 1050 229.9 4.8e-60
NP_878910 (OMIM: 605999) C-type lectin domain fami ( 316) 769 170.7 3.3e-42
XP_011521916 (OMIM: 605999) PREDICTED: C-type lect ( 319) 769 170.7 3.3e-42
XP_011521915 (OMIM: 605999) PREDICTED: C-type lect ( 319) 769 170.7 3.3e-42
XP_011521917 (OMIM: 605999) PREDICTED: C-type lect ( 315) 750 166.7 5.3e-41
XP_016882280 (OMIM: 616838) PREDICTED: C-type lect ( 243) 401 93.1 5.9e-19
XP_016882279 (OMIM: 616838) PREDICTED: C-type lect ( 293) 399 92.8 8.9e-19
XP_016882277 (OMIM: 616838) PREDICTED: C-type lect ( 310) 399 92.8 9.3e-19
XP_016882275 (OMIM: 616838) PREDICTED: C-type lect ( 310) 399 92.8 9.3e-19
XP_016882278 (OMIM: 616838) PREDICTED: C-type lect ( 310) 399 92.8 9.3e-19
XP_016882276 (OMIM: 616838) PREDICTED: C-type lect ( 310) 399 92.8 9.3e-19
XP_016882274 (OMIM: 616838) PREDICTED: C-type lect ( 310) 399 92.8 9.3e-19
NP_001191047 (OMIM: 616838) C-type lectin domain f ( 378) 399 92.9 1.1e-18
NP_001138367 (OMIM: 604672,607948,609423,614371) C ( 312) 395 92.0 1.7e-18
XP_011524043 (OMIM: 607621) PREDICTED: collectin-1 ( 725) 387 90.7 9.7e-18
NP_569057 (OMIM: 607621) collectin-12 [Homo sapien ( 742) 387 90.7 9.9e-18
NP_001138365 (OMIM: 604672,607948,609423,614371) C ( 268) 372 87.1 4.3e-17
NP_001138379 (OMIM: 605872) C-type lectin domain f ( 332) 372 87.2 5e-17
NP_001193948 (OMIM: 151445) low affinity immunoglo ( 320) 368 86.3 8.8e-17
NP_001207429 (OMIM: 151445) low affinity immunoglo ( 321) 368 86.3 8.8e-17
NP_001993 (OMIM: 151445) low affinity immunoglobul ( 321) 368 86.3 8.8e-17
XP_005272519 (OMIM: 151445) PREDICTED: low affinit ( 321) 368 86.3 8.8e-17
NP_001138366 (OMIM: 604672,607948,609423,614371) C ( 360) 367 86.1 1.1e-16
NP_001138368 (OMIM: 604672,607948,609423,614371) C ( 380) 367 86.2 1.1e-16
NP_066978 (OMIM: 604672,607948,609423,614371) CD20 ( 404) 367 86.2 1.2e-16
XP_006722677 (OMIM: 605872) PREDICTED: C-type lect ( 343) 364 85.5 1.7e-16
NP_001138376 (OMIM: 605872) C-type lectin domain f ( 348) 364 85.5 1.7e-16
XP_011518916 (OMIM: 609962) PREDICTED: C-type lect ( 188) 361 84.6 1.7e-16
NP_001138381 (OMIM: 605872) C-type lectin domain f ( 353) 364 85.5 1.7e-16
XP_006722675 (OMIM: 605872) PREDICTED: C-type lect ( 371) 364 85.5 1.7e-16
>>NP_001188281 (OMIM: 108361) asialoglycoprotein recepto (306 aa)
initn: 2175 init1: 2175 opt: 2175 Z-score: 2479.0 bits: 466.8 E(85289): 2.4e-131
Smith-Waterman score: 2175; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KB6 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LLALSFNILLLVVICVTGSQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLALSFNILLLVVICVTGSQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 GSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 WVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRN
250 260 270 280 290 300
pF1KB6 ATGEVA
::::::
NP_001 ATGEVA
>>XP_016880141 (OMIM: 108361) PREDICTED: asialoglycoprot (311 aa)
initn: 1631 init1: 1631 opt: 2155 Z-score: 2456.1 bits: 462.6 E(85289): 4.6e-130
Smith-Waterman score: 2155; 98.4% identity (98.4% similar) in 311 aa overlap (1-306:1-311)
10 20 30 40 50 60
pF1KB6 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 LLALSFNILLLVVICVTGSQS-----AQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_016 LLALSFNILLLVVICVTGSQSEGHGGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
250 260 270 280 290 300
300
pF1KB6 EKRRNATGEVA
:::::::::::
XP_016 EKRRNATGEVA
310
>>NP_550434 (OMIM: 108361) asialoglycoprotein receptor 2 (311 aa)
initn: 1634 init1: 1634 opt: 2155 Z-score: 2456.1 bits: 462.6 E(85289): 4.6e-130
Smith-Waterman score: 2155; 98.4% identity (98.4% similar) in 311 aa overlap (1-306:1-311)
10 20 30 40 50 60
pF1KB6 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_550 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 LLALSFNILLLVVICVTGSQS-----AQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_550 LLALSFNILLLVVICVTGSQSEGHRGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_550 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_550 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_550 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
250 260 270 280 290 300
300
pF1KB6 EKRRNATGEVA
:::::::::::
NP_550 EKRRNATGEVA
310
>>XP_016880142 (OMIM: 108361) PREDICTED: asialoglycoprot (311 aa)
initn: 1631 init1: 1631 opt: 2155 Z-score: 2456.1 bits: 462.6 E(85289): 4.6e-130
Smith-Waterman score: 2155; 98.4% identity (98.4% similar) in 311 aa overlap (1-306:1-311)
10 20 30 40 50 60
pF1KB6 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 LLALSFNILLLVVICVTGSQS-----AQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_016 LLALSFNILLLVVICVTGSQSEGHGGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
250 260 270 280 290 300
300
pF1KB6 EKRRNATGEVA
:::::::::::
XP_016 EKRRNATGEVA
310
>>NP_001172 (OMIM: 108361) asialoglycoprotein receptor 2 (311 aa)
initn: 1634 init1: 1634 opt: 2155 Z-score: 2456.1 bits: 462.6 E(85289): 4.6e-130
Smith-Waterman score: 2155; 98.4% identity (98.4% similar) in 311 aa overlap (1-306:1-311)
10 20 30 40 50 60
pF1KB6 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 LLALSFNILLLVVICVTGSQS-----AQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 LLALSFNILLLVVICVTGSQSEGHRGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
250 260 270 280 290 300
300
pF1KB6 EKRRNATGEVA
:::::::::::
NP_001 EKRRNATGEVA
310
>>XP_006721589 (OMIM: 108361) PREDICTED: asialoglycoprot (287 aa)
initn: 1899 init1: 1899 opt: 1899 Z-score: 2165.2 bits: 408.6 E(85289): 7.3e-114
Smith-Waterman score: 1988; 93.8% identity (93.8% similar) in 306 aa overlap (1-306:1-287)
10 20 30 40 50 60
pF1KB6 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
::::::::::::::::::::::: ::::::::::::::::::
XP_006 MAKDFQDIQQLSSEENDHPFHQG-------------------PPPAQPLAQRLCSMVCFS
10 20 30 40
70 80 90 100 110 120
pF1KB6 LLALSFNILLLVVICVTGSQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LLALSFNILLLVVICVTGSQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 TSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 GSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 WVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRN
230 240 250 260 270 280
pF1KB6 ATGEVA
::::::
XP_006 ATGEVA
>>NP_550435 (OMIM: 108361) asialoglycoprotein receptor 2 (287 aa)
initn: 1899 init1: 1899 opt: 1899 Z-score: 2165.2 bits: 408.6 E(85289): 7.3e-114
Smith-Waterman score: 1988; 93.8% identity (93.8% similar) in 306 aa overlap (1-306:1-287)
10 20 30 40 50 60
pF1KB6 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
::::::::::::::::::::::: ::::::::::::::::::
NP_550 MAKDFQDIQQLSSEENDHPFHQG-------------------PPPAQPLAQRLCSMVCFS
10 20 30 40
70 80 90 100 110 120
pF1KB6 LLALSFNILLLVVICVTGSQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_550 LLALSFNILLLVVICVTGSQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 TSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_550 TSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 GSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_550 GSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 WVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_550 WVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRN
230 240 250 260 270 280
pF1KB6 ATGEVA
::::::
NP_550 ATGEVA
>>XP_005256705 (OMIM: 108361) PREDICTED: asialoglycoprot (287 aa)
initn: 1899 init1: 1899 opt: 1899 Z-score: 2165.2 bits: 408.6 E(85289): 7.3e-114
Smith-Waterman score: 1988; 93.8% identity (93.8% similar) in 306 aa overlap (1-306:1-287)
10 20 30 40 50 60
pF1KB6 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
::::::::::::::::::::::: ::::::::::::::::::
XP_005 MAKDFQDIQQLSSEENDHPFHQG-------------------PPPAQPLAQRLCSMVCFS
10 20 30 40
70 80 90 100 110 120
pF1KB6 LLALSFNILLLVVICVTGSQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LLALSFNILLLVVICVTGSQSAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGSVGDKI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 TSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVNWVEHQ
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB6 GSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDSDGSWK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB6 WVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVCEKRRN
230 240 250 260 270 280
pF1KB6 ATGEVA
::::::
XP_005 ATGEVA
>>NP_550436 (OMIM: 108361) asialoglycoprotein receptor 2 (292 aa)
initn: 1621 init1: 1621 opt: 1879 Z-score: 2142.4 bits: 404.4 E(85289): 1.4e-112
Smith-Waterman score: 1968; 92.3% identity (92.3% similar) in 311 aa overlap (1-306:1-292)
10 20 30 40 50 60
pF1KB6 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
::::::::::::::::::::::: ::::::::::::::::::
NP_550 MAKDFQDIQQLSSEENDHPFHQG-------------------PPPAQPLAQRLCSMVCFS
10 20 30 40
70 80 90 100 110
pF1KB6 LLALSFNILLLVVICVTGSQS-----AQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_550 LLALSFNILLLVVICVTGSQSEGHRGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_550 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB6 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_550 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB6 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_550 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
230 240 250 260 270 280
300
pF1KB6 EKRRNATGEVA
:::::::::::
NP_550 EKRRNATGEVA
290
>>XP_016880140 (OMIM: 108361) PREDICTED: asialoglycoprot (292 aa)
initn: 1618 init1: 1618 opt: 1879 Z-score: 2142.4 bits: 404.4 E(85289): 1.4e-112
Smith-Waterman score: 1968; 92.3% identity (92.3% similar) in 311 aa overlap (1-306:1-292)
10 20 30 40 50 60
pF1KB6 MAKDFQDIQQLSSEENDHPFHQGEGPGTRRLNPRRGNPFLKGPPPAQPLAQRLCSMVCFS
::::::::::::::::::::::: ::::::::::::::::::
XP_016 MAKDFQDIQQLSSEENDHPFHQG-------------------PPPAQPLAQRLCSMVCFS
10 20 30 40
70 80 90 100 110
pF1KB6 LLALSFNILLLVVICVTGSQS-----AQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_016 LLALSFNILLLVVICVTGSQSEGHGGAQLQAELRSLKEAFSNFSSSTLTEVQAISTHGGS
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGDKITSLGAKLEKQQQDLKADHDALLFHLKHFPVDLRFVACQMELLHSNGSQRTCCPVN
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB6 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTWIGLTDS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB6 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DGSWKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQPDGRWNDDFCLQVYRWVC
230 240 250 260 270 280
300
pF1KB6 EKRRNATGEVA
:::::::::::
XP_016 EKRRNATGEVA
290
306 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:39:49 2016 done: Fri Nov 4 17:39:50 2016
Total Scan time: 7.120 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]