FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6420, 339 aa
  1>>>pF1KB6420 339 - 339 aa - 339 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8853+/-0.000336; mu= 10.2829+/- 0.021
 mean_var=125.3315+/-24.754, 0's: 0 Z-trim(118.3): 5  B-trim: 1044 in 1/54
 Lambda= 0.114563
 statistics sampled from 31158 (31163) to 31158 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.365), width:  16
 Scan time:  8.860

The best scores are:                                      opt bits E(85289)
XP_016884978 (OMIM: 300139,300472) PREDICTED: immu ( 339) 2232 379.7  5e-105
NP_001542 (OMIM: 300139,300472) immunoglobulin-bin ( 339) 2232 379.7  5e-105
XP_016884979 (OMIM: 300139,300472) PREDICTED: immu ( 174) 1044 183.1 3.8e-46


>>XP_016884978 (OMIM: 300139,300472) PREDICTED: immunogl  (339 aa)
 initn: 2232 init1: 2232 opt: 2232  Z-score: 2006.6  bits: 379.7 E(85289): 5e-105
Smith-Waterman score: 2232; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB6 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 KPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQ
              250       260       270       280       290       300

              310       320       330         
pF1KB6 EEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG
       :::::::::::::::::::::::::::::::::::::::
XP_016 EEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG
              310       320       330         

>>NP_001542 (OMIM: 300139,300472) immunoglobulin-binding  (339 aa)
 initn: 2232 init1: 2232 opt: 2232  Z-score: 2006.6  bits: 379.7 E(85289): 5e-105
Smith-Waterman score: 2232; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB6 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 KPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPFILTRNMAQAKVFGAGYPSLPTMTVSDWYEQHRKYGALPDQGIAKAAPEEFRKAAQQQ
              250       260       270       280       290       300

              310       320       330         
pF1KB6 EEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG
       :::::::::::::::::::::::::::::::::::::::
NP_001 EEQEEKEEEDDEQTLHRAREWDDWKDTHPRGYGNRQNMG
              310       320       330         

>>XP_016884979 (OMIM: 300139,300472) PREDICTED: immunogl  (174 aa)
 initn: 1039 init1: 1039 opt: 1044  Z-score: 949.5  bits: 183.1 E(85289): 3.8e-46
Smith-Waterman score: 1044; 95.3% identity (97.7% similar) in 171 aa overlap (1-171:1-171)

               10        20        30        40        50        60
pF1KB6 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAAEDELQLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE
       :::::::::::::::::::::::::::::::::::::::::..   .: .:         
XP_016 VAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRHQLLTHLARRGLQ      
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB6 SGQADDERVREYYLLHLQRWIDISLEEIESIDQEIKILRERDSSREASTSNSSRQERPPV




339 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:50:23 2016 done: Fri Nov  4 17:50:24 2016
 Total Scan time:  8.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]