Result of FASTA (ccds) for
pF1KB6417
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6417, 309 aa
1>>>pF1KB6417 309 - 309 aa - 309 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0155+/-0.000654; mu= 13.9312+/- 0.040
mean_var=92.7475+/-18.449, 0's: 0 Z-trim(113.0): 26 B-trim: 6 in 1/50
Lambda= 0.133175
statistics sampled from 13626 (13648) to 13626 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.419), width: 16
Scan time: 2.920
The best scores are: opt bits E(32554)
CCDS2674.2 MYD88 gene_id:4615|Hs108|chr3 ( 309) 2073 407.6 6.1e-114
CCDS54565.1 MYD88 gene_id:4615|Hs108|chr3 ( 317) 2047 402.6 2e-112
CCDS54566.1 MYD88 gene_id:4615|Hs108|chr3 ( 204) 1091 218.8 2.8e-57
CCDS54567.1 MYD88 gene_id:4615|Hs108|chr3 ( 264) 995 200.5 1.2e-51
CCDS54568.1 MYD88 gene_id:4615|Hs108|chr3 ( 159) 796 162.1 2.6e-40
>>CCDS2674.2 MYD88 gene_id:4615|Hs108|chr3 (309 aa)
initn: 2073 init1: 2073 opt: 2073 Z-score: 2159.0 bits: 407.6 E(32554): 6.1e-114
Smith-Waterman score: 2073; 100.0% identity (100.0% similar) in 309 aa overlap (1-309:1-309)
10 20 30 40 50 60
pF1KB6 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 LQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWT
250 260 270 280 290 300
pF1KB6 RLAKALSLP
:::::::::
CCDS26 RLAKALSLP
>>CCDS54565.1 MYD88 gene_id:4615|Hs108|chr3 (317 aa)
initn: 2062 init1: 1517 opt: 2047 Z-score: 2131.9 bits: 402.6 E(32554): 2e-112
Smith-Waterman score: 2047; 97.5% identity (97.5% similar) in 317 aa overlap (1-309:1-317)
10 20 30 40 50 60
pF1KB6 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKR--------CRRM
:::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS54 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRLARRPRGGCRRM
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB6 VVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNP
250 260 270 280 290 300
300
pF1KB6 CTKSWFWTRLAKALSLP
:::::::::::::::::
CCDS54 CTKSWFWTRLAKALSLP
310
>>CCDS54566.1 MYD88 gene_id:4615|Hs108|chr3 (204 aa)
initn: 1091 init1: 1091 opt: 1091 Z-score: 1141.9 bits: 218.8 E(32554): 2.8e-57
Smith-Waterman score: 1091; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)
10 20 30 40 50 60
pF1KB6 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGAAGWWWLSLMIT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDY
CCDS54 CRARNVTSRPNLHSASLQVPIRSD
190 200
>>CCDS54567.1 MYD88 gene_id:4615|Hs108|chr3 (264 aa)
initn: 994 init1: 994 opt: 995 Z-score: 1040.7 bits: 200.5 E(32554): 1.2e-51
Smith-Waterman score: 1686; 85.4% identity (85.4% similar) in 309 aa overlap (1-309:1-264)
10 20 30 40 50 60
pF1KB6 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
:: :::::::::::::
CCDS54 SI---------------------------------------------GHMPERFDAFICY
130
190 200 210 220 230 240
pF1KB6 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDY
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB6 LQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWT
200 210 220 230 240 250
pF1KB6 RLAKALSLP
:::::::::
CCDS54 RLAKALSLP
260
>>CCDS54568.1 MYD88 gene_id:4615|Hs108|chr3 (159 aa)
initn: 796 init1: 796 opt: 796 Z-score: 837.2 bits: 162.1 E(32554): 2.6e-40
Smith-Waterman score: 796; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122)
10 20 30 40 50 60
pF1KB6 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRPDRAEAPGPPAMAAGGPGAGSAAPVSSTSSLPLAALNMRVRRRLSLFLNVRTQVAADW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TALAEEMDFEYLEIRQLETQADPTGRLLDAWQGRPGASVGRLLELLTKLGRDDVLLELGP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SIEEDCQKYILKQQQEEAEKPLQVAAVDSSVPRTAELAGITTLDDPLGHMPERFDAFICY
::
CCDS54 SIGAAGWWWLSLMITCRARNVTSRPNLHSASLQVPIRSD
130 140 150
309 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:13:29 2016 done: Sat Nov 5 01:13:30 2016
Total Scan time: 2.920 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]