FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6410, 335 aa
  1>>>pF1KB6410 335 - 335 aa - 335 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8369+/-0.000366; mu= 18.2202+/- 0.023
 mean_var=56.3468+/-11.547, 0's: 0 Z-trim(111.9): 24  B-trim: 993 in 1/51
 Lambda= 0.170860
 statistics sampled from 20680 (20691) to 20680 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.243), width:  16
 Scan time:  7.290

The best scores are:                                      opt bits E(85289)
NP_060277 (OMIM: 610107) probable tRNA N6-adenosin ( 335) 2238 559.9 2.7e-159


>>NP_060277 (OMIM: 610107) probable tRNA N6-adenosine th  (335 aa)
 initn: 2238 init1: 2238 opt: 2238  Z-score: 2980.7  bits: 559.9 E(85289): 2.7e-159
Smith-Waterman score: 2238; 100.0% identity (100.0% similar) in 335 aa overlap (1-335:1-335)

               10        20        30        40        50        60
pF1KB6 MPAVLGFEGSANKIGVGVVRDGKVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MPAVLGFEGSANKIGVGVVRDGKVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTESGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTVAQLWNKPLVGVNHCIGHIEMGRLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LTESGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTVAQLWNKPLVGVNHCIGHIEMGRLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 TGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAHRMLATGECTPEDLCFSLQETVFAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAHRMLATGECTPEDLCFSLQETVFAM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LVEITERAMAHCGSQEALIVGGVGCNVRLQEMMATMCQERGARLFATDERFCIDNGAMIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LVEITERAMAHCGSQEALIVGGVGCNVRLQEMMATMCQERGARLFATDERFCIDNGAMIA
              250       260       270       280       290       300

              310       320       330     
pF1KB6 QAGWEMFRAGHRTPLSDSGVTQRYRTDEVEVTWRD
       :::::::::::::::::::::::::::::::::::
NP_060 QAGWEMFRAGHRTPLSDSGVTQRYRTDEVEVTWRD
              310       320       330     




335 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:53:56 2016 done: Fri Nov  4 22:53:57 2016
 Total Scan time:  7.290 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]