Result of FASTA (omim) for
pF1KB6390
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6390, 301 aa
1>>>pF1KB6390 301 - 301 aa - 301 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8307+/-0.00033; mu= 15.1128+/- 0.021
mean_var=110.6221+/-22.457, 0's: 0 Z-trim(118.1): 9 B-trim: 0 in 0/54
Lambda= 0.121942
statistics sampled from 30697 (30706) to 30697 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.36), width: 16
Scan time: 8.050
The best scores are: opt bits E(85289)
NP_061968 (OMIM: 608188) cardiolipin synthase (CMP ( 301) 2026 366.7 3.2e-101
XP_011527565 (OMIM: 608188) PREDICTED: cardiolipin ( 193) 1319 242.1 6.4e-64
NP_001120930 (OMIM: 608188) cardiolipin synthase ( ( 202) 1280 235.3 7.7e-62
NP_001310490 (OMIM: 608188) cardiolipin synthase ( ( 190) 1207 222.4 5.4e-58
NP_001310492 (OMIM: 608188) cardiolipin synthase ( ( 190) 1207 222.4 5.4e-58
XP_005260795 (OMIM: 608188) PREDICTED: cardiolipin ( 190) 1207 222.4 5.4e-58
NP_001310493 (OMIM: 608188) cardiolipin synthase ( ( 190) 1207 222.4 5.4e-58
NP_001310491 (OMIM: 608188) cardiolipin synthase ( ( 190) 1207 222.4 5.4e-58
>>NP_061968 (OMIM: 608188) cardiolipin synthase (CMP-for (301 aa)
initn: 2026 init1: 2026 opt: 2026 Z-score: 1938.2 bits: 366.7 E(85289): 3.2e-101
Smith-Waterman score: 2026; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:1-301)
10 20 30 40 50 60
pF1KB6 MLALRVARGSWGALRGAAWAPGTRPSKRRACWALLPPVPCCLGCLAERWRLRPAALGLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MLALRVARGSWGALRGAAWAPGTRPSKRRACWALLPPVPCCLGCLAERWRLRPAALGLRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PGIGQRNHCSGAGKAAPRPAAGAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PGIGQRNHCSGAGKAAPRPAAGAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 APVLGYLIIEEDFNIALGVFALAGLTDLLDGFIARNWANQRSALGSALDPLADKILISIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 APVLGYLIIEEDFNIALGVFALAGLTDLLDGFIARNWANQRSALGSALDPLADKILISIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YVSLTYADLIPVPLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YVSLTYADLIPVPLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 ISKVNTAVQLILVAASLAAPVFNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ISKVNTAVQLILVAASLAAPVFNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIK
250 260 270 280 290 300
pF1KB6 D
:
NP_061 D
>>XP_011527565 (OMIM: 608188) PREDICTED: cardiolipin syn (193 aa)
initn: 1319 init1: 1319 opt: 1319 Z-score: 1268.5 bits: 242.1 E(85289): 6.4e-64
Smith-Waterman score: 1319; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB6 MLALRVARGSWGALRGAAWAPGTRPSKRRACWALLPPVPCCLGCLAERWRLRPAALGLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLALRVARGSWGALRGAAWAPGTRPSKRRACWALLPPVPCCLGCLAERWRLRPAALGLRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PGIGQRNHCSGAGKAAPRPAAGAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGIGQRNHCSGAGKAAPRPAAGAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 APVLGYLIIEEDFNIALGVFALAGLTDLLDGFIARNWANQRSALGSALDPLADKILISIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APVLGYLIIEEDFNIALGVFALAGLTDLLDGFIARNWANQRSALGSALDPLADKILISIL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YVSLTYADLIPVPLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTF
:::::::::::
XP_011 YVSLTYADLIPGA
190
>>NP_001120930 (OMIM: 608188) cardiolipin synthase (CMP- (202 aa)
initn: 1280 init1: 1280 opt: 1280 Z-score: 1231.2 bits: 235.3 E(85289): 7.7e-62
Smith-Waterman score: 1280; 100.0% identity (100.0% similar) in 199 aa overlap (103-301:4-202)
80 90 100 110 120 130
pF1KB6 GKAAPRPAAGAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGLAPVLGYLIIEED
::::::::::::::::::::::::::::::
NP_001 MPQYENPWTIPNMLSMTRIGLAPVLGYLIIEED
10 20 30
140 150 160 170 180 190
pF1KB6 FNIALGVFALAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FNIALGVFALAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPV
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB6 PLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLIL
100 110 120 130 140 150
260 270 280 290 300
pF1KB6 VAASLAAPVFNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAASLAAPVFNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
160 170 180 190 200
>>NP_001310490 (OMIM: 608188) cardiolipin synthase (CMP- (190 aa)
initn: 1207 init1: 1207 opt: 1207 Z-score: 1162.1 bits: 222.4 E(85289): 5.4e-58
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 190 aa overlap (112-301:1-190)
90 100 110 120 130 140
pF1KB6 GAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGLAPVLGYLIIEEDFNIALGVFA
::::::::::::::::::::::::::::::
NP_001 MLSMTRIGLAPVLGYLIIEEDFNIALGVFA
10 20 30
150 160 170 180 190 200
pF1KB6 LAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPVPLTYMIISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPVPLTYMIISR
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 DVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPV
100 110 120 130 140 150
270 280 290 300
pF1KB6 FNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
::::::::::::::::::::::::::::::::::::::::
NP_001 FNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
160 170 180 190
>>NP_001310492 (OMIM: 608188) cardiolipin synthase (CMP- (190 aa)
initn: 1207 init1: 1207 opt: 1207 Z-score: 1162.1 bits: 222.4 E(85289): 5.4e-58
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 190 aa overlap (112-301:1-190)
90 100 110 120 130 140
pF1KB6 GAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGLAPVLGYLIIEEDFNIALGVFA
::::::::::::::::::::::::::::::
NP_001 MLSMTRIGLAPVLGYLIIEEDFNIALGVFA
10 20 30
150 160 170 180 190 200
pF1KB6 LAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPVPLTYMIISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPVPLTYMIISR
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 DVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPV
100 110 120 130 140 150
270 280 290 300
pF1KB6 FNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
::::::::::::::::::::::::::::::::::::::::
NP_001 FNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
160 170 180 190
>>XP_005260795 (OMIM: 608188) PREDICTED: cardiolipin syn (190 aa)
initn: 1207 init1: 1207 opt: 1207 Z-score: 1162.1 bits: 222.4 E(85289): 5.4e-58
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 190 aa overlap (112-301:1-190)
90 100 110 120 130 140
pF1KB6 GAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGLAPVLGYLIIEEDFNIALGVFA
::::::::::::::::::::::::::::::
XP_005 MLSMTRIGLAPVLGYLIIEEDFNIALGVFA
10 20 30
150 160 170 180 190 200
pF1KB6 LAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPVPLTYMIISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPVPLTYMIISR
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 DVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPV
100 110 120 130 140 150
270 280 290 300
pF1KB6 FNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
::::::::::::::::::::::::::::::::::::::::
XP_005 FNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
160 170 180 190
>>NP_001310493 (OMIM: 608188) cardiolipin synthase (CMP- (190 aa)
initn: 1207 init1: 1207 opt: 1207 Z-score: 1162.1 bits: 222.4 E(85289): 5.4e-58
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 190 aa overlap (112-301:1-190)
90 100 110 120 130 140
pF1KB6 GAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGLAPVLGYLIIEEDFNIALGVFA
::::::::::::::::::::::::::::::
NP_001 MLSMTRIGLAPVLGYLIIEEDFNIALGVFA
10 20 30
150 160 170 180 190 200
pF1KB6 LAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPVPLTYMIISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPVPLTYMIISR
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 DVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPV
100 110 120 130 140 150
270 280 290 300
pF1KB6 FNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
::::::::::::::::::::::::::::::::::::::::
NP_001 FNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
160 170 180 190
>>NP_001310491 (OMIM: 608188) cardiolipin synthase (CMP- (190 aa)
initn: 1207 init1: 1207 opt: 1207 Z-score: 1162.1 bits: 222.4 E(85289): 5.4e-58
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 190 aa overlap (112-301:1-190)
90 100 110 120 130 140
pF1KB6 GAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGLAPVLGYLIIEEDFNIALGVFA
::::::::::::::::::::::::::::::
NP_001 MLSMTRIGLAPVLGYLIIEEDFNIALGVFA
10 20 30
150 160 170 180 190 200
pF1KB6 LAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPVPLTYMIISR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPVPLTYMIISR
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB6 DVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLILVAASLAAPV
100 110 120 130 140 150
270 280 290 300
pF1KB6 FNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
::::::::::::::::::::::::::::::::::::::::
NP_001 FNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
160 170 180 190
301 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:50:18 2016 done: Fri Nov 4 22:50:19 2016
Total Scan time: 8.050 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]