FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6390, 301 aa
  1>>>pF1KB6390 301 - 301 aa - 301 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9387+/-0.000811; mu= 14.7565+/- 0.049
 mean_var=112.2906+/-22.772, 0's: 0 Z-trim(111.7): 7  B-trim: 0 in 0/51
 Lambda= 0.121033
 statistics sampled from 12546 (12549) to 12546 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.385), width:  16
 Scan time:  2.770

The best scores are:                                      opt bits E(32554)
CCDS13096.1 CRLS1 gene_id:54675|Hs108|chr20        ( 301) 2026 363.9 8.1e-101
CCDS46578.1 CRLS1 gene_id:54675|Hs108|chr20        ( 202) 1280 233.5   1e-61


>>CCDS13096.1 CRLS1 gene_id:54675|Hs108|chr20             (301 aa)
 initn: 2026 init1: 2026 opt: 2026  Z-score: 1923.4  bits: 363.9 E(32554): 8.1e-101
Smith-Waterman score: 2026; 100.0% identity (100.0% similar) in 301 aa overlap (1-301:1-301)

               10        20        30        40        50        60
pF1KB6 MLALRVARGSWGALRGAAWAPGTRPSKRRACWALLPPVPCCLGCLAERWRLRPAALGLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLALRVARGSWGALRGAAWAPGTRPSKRRACWALLPPVPCCLGCLAERWRLRPAALGLRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PGIGQRNHCSGAGKAAPRPAAGAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PGIGQRNHCSGAGKAAPRPAAGAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 APVLGYLIIEEDFNIALGVFALAGLTDLLDGFIARNWANQRSALGSALDPLADKILISIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 APVLGYLIIEEDFNIALGVFALAGLTDLLDGFIARNWANQRSALGSALDPLADKILISIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 YVSLTYADLIPVPLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YVSLTYADLIPVPLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 ISKVNTAVQLILVAASLAAPVFNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ISKVNTAVQLILVAASLAAPVFNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIK
              250       260       270       280       290       300

        
pF1KB6 D
       :
CCDS13 D
        

>>CCDS46578.1 CRLS1 gene_id:54675|Hs108|chr20             (202 aa)
 initn: 1280 init1: 1280 opt: 1280  Z-score: 1221.7  bits: 233.5 E(32554): 1e-61
Smith-Waterman score: 1280; 100.0% identity (100.0% similar) in 199 aa overlap (103-301:4-202)

             80        90       100       110       120       130  
pF1KB6 GKAAPRPAAGAGAAAEAPGGQWGPASTPSLYENPWTIPNMLSMTRIGLAPVLGYLIIEED
                                     ::::::::::::::::::::::::::::::
CCDS46                            MPQYENPWTIPNMLSMTRIGLAPVLGYLIIEED
                                          10        20        30   

            140       150       160       170       180       190  
pF1KB6 FNIALGVFALAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FNIALGVFALAGLTDLLDGFIARNWANQRSALGSALDPLADKILISILYVSLTYADLIPV
            40        50        60        70        80        90   

            200       210       220       230       240       250  
pF1KB6 PLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PLTYMIISRDVMLIAAVFYVRYRTLPTPRTLAKYFNPCYATARLKPTFISKVNTAVQLIL
           100       110       120       130       140       150   

            260       270       280       290       300 
pF1KB6 VAASLAAPVFNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VAASLAAPVFNYADSIYLQILWCFTAFTTAASAYSYYHYGRKTVQVIKD
           160       170       180       190       200  




301 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:50:17 2016 done: Fri Nov  4 22:50:18 2016
 Total Scan time:  2.770 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]