Result of FASTA (omim) for
pF1KB6379
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6379, 228 aa
1>>>pF1KB6379 228 - 228 aa - 228 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9707+/-0.000464; mu= -3.2491+/- 0.029
mean_var=173.4281+/-34.557, 0's: 0 Z-trim(115.0): 7 B-trim: 91 in 1/53
Lambda= 0.097390
statistics sampled from 25144 (25150) to 25144 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.295), width: 16
Scan time: 6.000
The best scores are: opt bits E(85289)
NP_001196 (OMIM: 603291) vesicle transport protein ( 228) 1417 211.0 1.4e-54
NP_053582 (OMIM: 603291) vesicle transport protein ( 271) 1030 156.6 3.7e-38
XP_011532941 (OMIM: 603291) PREDICTED: vesicle tra ( 234) 640 101.8 1e-21
XP_011532940 (OMIM: 603291) PREDICTED: vesicle tra ( 241) 640 101.8 1.1e-21
NP_053581 (OMIM: 603291) vesicle transport protein ( 194) 625 99.7 3.8e-21
NP_053583 (OMIM: 603291) vesicle transport protein ( 237) 625 99.7 4.5e-21
>>NP_001196 (OMIM: 603291) vesicle transport protein SEC (228 aa)
initn: 1417 init1: 1417 opt: 1417 Z-score: 1101.0 bits: 211.0 E(85289): 1.4e-54
Smith-Waterman score: 1417; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KB6 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LEQLAKEQDKESEKQLLLQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEQLAKEQDKESEKQLLLQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LRQRKTTKESLAQTSSTITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRQRKTTKESLAQTSSTITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSM
130 140 150 160 170 180
190 200 210 220
pF1KB6 SGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRLFPFL
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRLFPFL
190 200 210 220
>>NP_053582 (OMIM: 603291) vesicle transport protein SEC (271 aa)
initn: 1403 init1: 1030 opt: 1030 Z-score: 806.0 bits: 156.6 E(85289): 3.7e-38
Smith-Waterman score: 1247; 83.5% identity (83.5% similar) in 260 aa overlap (12-228:12-271)
10 20 30 40 50
pF1KB6 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQ-
::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQP
10 20 30 40 50 60
60 70
pF1KB6 ------------------------------------------DLEQLAKEQDKESEKQLL
::::::::::::::::::
NP_053 VLYQRAFIWTASTFFFKLTYSLTDFSSTQHDFNSPTTPVTFSDLEQLAKEQDKESEKQLL
70 80 90 100 110 120
80 90 100 110 120 130
pF1KB6 LQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDLLRQRKTTKESLAQTSST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 LQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDLLRQRKTTKESLAQTSST
130 140 150 160 170 180
140 150 160 170 180 190
pF1KB6 ITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 ITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRR
190 200 210 220 230 240
200 210 220
pF1KB6 ELTDKLLIFLALALFLATVLYIVKKRLFPFL
:::::::::::::::::::::::::::::::
NP_053 ELTDKLLIFLALALFLATVLYIVKKRLFPFL
250 260 270
>>XP_011532941 (OMIM: 603291) PREDICTED: vesicle transpo (234 aa)
initn: 1013 init1: 640 opt: 640 Z-score: 510.8 bits: 101.8 E(85289): 1e-21
Smith-Waterman score: 857; 77.9% identity (77.9% similar) in 195 aa overlap (12-163:12-206)
10 20 30 40 50
pF1KB6 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQ-
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQP
10 20 30 40 50 60
60 70
pF1KB6 ------------------------------------------DLEQLAKEQDKESEKQLL
::::::::::::::::::
XP_011 VLYQRAFIWTASTFFFKLTYSLTDFSSTQHDFNSPTTPVTFSDLEQLAKEQDKESEKQLL
70 80 90 100 110 120
80 90 100 110 120 130
pF1KB6 LQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDLLRQRKTTKESLAQTSST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDLLRQRKTTKESLAQTSST
130 140 150 160 170 180
140 150 160 170 180 190
pF1KB6 ITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRR
::::::::::::::::::::::::::
XP_011 ITESLMGISRMMAQQVQQSEEAMQSLGNTYSIEKDKKTLAQDCHRNATAATLSL
190 200 210 220 230
>>XP_011532940 (OMIM: 603291) PREDICTED: vesicle transpo (241 aa)
initn: 1013 init1: 640 opt: 640 Z-score: 510.6 bits: 101.8 E(85289): 1.1e-21
Smith-Waterman score: 857; 77.9% identity (77.9% similar) in 195 aa overlap (12-163:12-206)
10 20 30 40 50
pF1KB6 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQ-
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQP
10 20 30 40 50 60
60 70
pF1KB6 ------------------------------------------DLEQLAKEQDKESEKQLL
::::::::::::::::::
XP_011 VLYQRAFIWTASTFFFKLTYSLTDFSSTQHDFNSPTTPVTFSDLEQLAKEQDKESEKQLL
70 80 90 100 110 120
80 90 100 110 120 130
pF1KB6 LQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDLLRQRKTTKESLAQTSST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDLLRQRKTTKESLAQTSST
130 140 150 160 170 180
140 150 160 170 180 190
pF1KB6 ITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRR
::::::::::::::::::::::::::
XP_011 ITESLMGISRMMAQQVQQSEEAMQSLGNTYSIEKDKKTLAQDCHRNATAATHFFTNDPGC
190 200 210 220 230 240
>>NP_053581 (OMIM: 603291) vesicle transport protein SEC (194 aa)
initn: 1182 init1: 623 opt: 625 Z-score: 500.7 bits: 99.7 E(85289): 3.8e-21
Smith-Waterman score: 1118; 85.1% identity (85.1% similar) in 228 aa overlap (1-228:1-194)
10 20 30 40 50 60
pF1KB6 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LEQLAKEQDKESEKQLLLQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDL
:::::::::::::::::::::::::::::
NP_053 LEQLAKEQDKESEKQLLLQEVENHKKQML-------------------------------
70 80
130 140 150 160 170 180
pF1KB6 LRQRKTTKESLAQTSSTITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 ---RKTTKESLAQTSSTITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSM
90 100 110 120 130 140
190 200 210 220
pF1KB6 SGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRLFPFL
::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 SGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRLFPFL
150 160 170 180 190
>>NP_053583 (OMIM: 603291) vesicle transport protein SEC (237 aa)
initn: 1168 init1: 623 opt: 625 Z-score: 499.3 bits: 99.7 E(85289): 4.5e-21
Smith-Waterman score: 1022; 71.6% identity (71.6% similar) in 271 aa overlap (1-228:1-237)
10 20 30 40 50
pF1KB6 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQ-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQP
10 20 30 40 50 60
60 70
pF1KB6 ------------------------------------------DLEQLAKEQDKESEKQLL
::::::::::::::::::
NP_053 VLYQRAFIWTASTFFFKLTYSLTDFSSTQHDFNSPTTPVTFSDLEQLAKEQDKESEKQLL
70 80 90 100 110 120
80 90 100 110 120 130
pF1KB6 LQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDLLRQRKTTKESLAQTSST
:::::::::::: ::::::::::::::
NP_053 LQEVENHKKQML----------------------------------RKTTKESLAQTSST
130 140
140 150 160 170 180 190
pF1KB6 ITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_053 ITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRR
150 160 170 180 190 200
200 210 220
pF1KB6 ELTDKLLIFLALALFLATVLYIVKKRLFPFL
:::::::::::::::::::::::::::::::
NP_053 ELTDKLLIFLALALFLATVLYIVKKRLFPFL
210 220 230
228 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:39:22 2016 done: Sat Nov 5 16:39:22 2016
Total Scan time: 6.000 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]