Result of FASTA (ccds) for
pF1KB6379
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6379, 228 aa
1>>>pF1KB6379 228 - 228 aa - 228 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3382+/-0.00115; mu= 0.4372+/- 0.069
mean_var=157.7978+/-31.194, 0's: 0 Z-trim(107.3): 10 B-trim: 14 in 1/50
Lambda= 0.102100
statistics sampled from 9488 (9492) to 9488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.292), width: 16
Scan time: 2.130
The best scores are: opt bits E(32554)
CCDS4384.1 BNIP1 gene_id:662|Hs108|chr5 ( 228) 1417 220.3 8.4e-58
CCDS4385.1 BNIP1 gene_id:662|Hs108|chr5 ( 271) 1030 163.3 1.4e-40
CCDS43400.1 BNIP1 gene_id:662|Hs108|chr5 ( 194) 625 103.6 9.6e-23
CCDS4386.1 BNIP1 gene_id:662|Hs108|chr5 ( 237) 625 103.6 1.1e-22
>>CCDS4384.1 BNIP1 gene_id:662|Hs108|chr5 (228 aa)
initn: 1417 init1: 1417 opt: 1417 Z-score: 1151.2 bits: 220.3 E(32554): 8.4e-58
Smith-Waterman score: 1417; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KB6 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LEQLAKEQDKESEKQLLLQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LEQLAKEQDKESEKQLLLQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LRQRKTTKESLAQTSSTITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LRQRKTTKESLAQTSSTITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSM
130 140 150 160 170 180
190 200 210 220
pF1KB6 SGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRLFPFL
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRLFPFL
190 200 210 220
>>CCDS4385.1 BNIP1 gene_id:662|Hs108|chr5 (271 aa)
initn: 1403 init1: 1030 opt: 1030 Z-score: 842.0 bits: 163.3 E(32554): 1.4e-40
Smith-Waterman score: 1247; 83.5% identity (83.5% similar) in 260 aa overlap (12-228:12-271)
10 20 30 40 50
pF1KB6 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQ-
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQP
10 20 30 40 50 60
60 70
pF1KB6 ------------------------------------------DLEQLAKEQDKESEKQLL
::::::::::::::::::
CCDS43 VLYQRAFIWTASTFFFKLTYSLTDFSSTQHDFNSPTTPVTFSDLEQLAKEQDKESEKQLL
70 80 90 100 110 120
80 90 100 110 120 130
pF1KB6 LQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDLLRQRKTTKESLAQTSST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDLLRQRKTTKESLAQTSST
130 140 150 160 170 180
140 150 160 170 180 190
pF1KB6 ITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRR
190 200 210 220 230 240
200 210 220
pF1KB6 ELTDKLLIFLALALFLATVLYIVKKRLFPFL
:::::::::::::::::::::::::::::::
CCDS43 ELTDKLLIFLALALFLATVLYIVKKRLFPFL
250 260 270
>>CCDS43400.1 BNIP1 gene_id:662|Hs108|chr5 (194 aa)
initn: 1182 init1: 623 opt: 625 Z-score: 521.8 bits: 103.6 E(32554): 9.6e-23
Smith-Waterman score: 1118; 85.1% identity (85.1% similar) in 228 aa overlap (1-228:1-194)
10 20 30 40 50 60
pF1KB6 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 LEQLAKEQDKESEKQLLLQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDL
:::::::::::::::::::::::::::::
CCDS43 LEQLAKEQDKESEKQLLLQEVENHKKQML-------------------------------
70 80
130 140 150 160 170 180
pF1KB6 LRQRKTTKESLAQTSSTITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSM
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ---RKTTKESLAQTSSTITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSM
90 100 110 120 130 140
190 200 210 220
pF1KB6 SGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRLFPFL
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRLFPFL
150 160 170 180 190
>>CCDS4386.1 BNIP1 gene_id:662|Hs108|chr5 (237 aa)
initn: 1168 init1: 623 opt: 625 Z-score: 520.5 bits: 103.6 E(32554): 1.1e-22
Smith-Waterman score: 1022; 71.6% identity (71.6% similar) in 271 aa overlap (1-228:1-237)
10 20 30 40 50
pF1KB6 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQ-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAAPQDVHVRICNQEIVKFDLEVKALIQDIRDCSGPLSALTELNTKVKEKFQQLRHRIQP
10 20 30 40 50 60
60 70
pF1KB6 ------------------------------------------DLEQLAKEQDKESEKQLL
::::::::::::::::::
CCDS43 VLYQRAFIWTASTFFFKLTYSLTDFSSTQHDFNSPTTPVTFSDLEQLAKEQDKESEKQLL
70 80 90 100 110 120
80 90 100 110 120 130
pF1KB6 LQEVENHKKQMLSNQASWRKANLTCKIAIDNLEKAELLQGGDLLRQRKTTKESLAQTSST
:::::::::::: ::::::::::::::
CCDS43 LQEVENHKKQML----------------------------------RKTTKESLAQTSST
130 140
140 150 160 170 180 190
pF1KB6 ITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ITESLMGISRMMAQQVQQSEEAMQSLVTSSRTILDANEEFKSMSGTIQLGRKLITKYNRR
150 160 170 180 190 200
200 210 220
pF1KB6 ELTDKLLIFLALALFLATVLYIVKKRLFPFL
:::::::::::::::::::::::::::::::
CCDS43 ELTDKLLIFLALALFLATVLYIVKKRLFPFL
210 220 230
228 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:39:21 2016 done: Sat Nov 5 16:39:21 2016
Total Scan time: 2.130 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]