FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6378, 299 aa
  1>>>pF1KB6378 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6044+/-0.000419; mu= 6.8422+/- 0.026
 mean_var=247.9081+/-49.460, 0's: 0 Z-trim(118.5): 35  B-trim: 0 in 0/57
 Lambda= 0.081457
 statistics sampled from 31441 (31475) to 31441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.369), width:  16
 Scan time:  7.970

The best scores are:                                      opt bits E(85289)
NP_067068 (OMIM: 605603) myozenin-1 [Homo sapiens] ( 299) 2013 249.4 6.5e-66
NP_057683 (OMIM: 605602,613838) myozenin-2 [Homo s ( 264)  305 48.6 1.6e-05
XP_006714297 (OMIM: 605602,613838) PREDICTED: myoz ( 195)  225 39.0  0.0089


>>NP_067068 (OMIM: 605603) myozenin-1 [Homo sapiens]      (299 aa)
 initn: 2013 init1: 2013 opt: 2013  Z-score: 1304.4  bits: 249.4 E(85289): 6.5e-66
Smith-Waterman score: 2013; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB6 MPLSGTPAPNKKRKSSKLIMELTGGGQESSGLNLGKKISVPRDVMLEELSLLTNRGSKMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MPLSGTPAPNKKRKSSKLIMELTGGGQESSGLNLGKKISVPRDVMLEELSLLTNRGSKMF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KLRQMRVEKFIYENHPDVFSDSSMDHFQKFLPTVGGQLGTAGQGFSYSKSNGRGGSQAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 KLRQMRVEKFIYENHPDVFSDSSMDHFQKFLPTVGGQLGTAGQGFSYSKSNGRGGSQAGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGSAGQYGSDQQHHLGSGSGAGGTGGPAGQAGRGGAAGTAGVGETGSGDQAGGEGKHITV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 SGSAGQYGSDQQHHLGSGSGAGGTGGPAGQAGRGGAAGTAGVGETGSGDQAGGEGKHITV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FKTYISPWERAMGVDPQQKMELGIDLLAYGAKAELPKYKSFNRTAMPYGGYEKASKRMTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 FKTYISPWERAMGVDPQQKMELGIDLLAYGAKAELPKYKSFNRTAMPYGGYEKASKRMTF
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB6 QMPKFDLGPLLSEPLVLYNQNLSNRPSFNRTPIPWLSSGEPVDYNVDIGIPLDGETEEL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 QMPKFDLGPLLSEPLVLYNQNLSNRPSFNRTPIPWLSSGEPVDYNVDIGIPLDGETEEL
              250       260       270       280       290         

>>NP_057683 (OMIM: 605602,613838) myozenin-2 [Homo sapie  (264 aa)
 initn: 524 init1: 271 opt: 305  Z-score: 220.2  bits: 48.6 E(85289): 1.6e-05
Smith-Waterman score: 470; 34.8% identity (57.5% similar) in 287 aa overlap (11-296:9-257)

               10        20        30        40        50        60
pF1KB6 MPLSGTPAPNKKRKSSKLIMELTGGGQESSGLNLGKKISVPRDVMLEELSLLTNRGSKMF
                 :.::..   .     :.. .:..::::.:.:::.:::::: :.:::...:
NP_057   MLSHNTMMKQRKQQATAIMKEVHGNDVDGMDLGKKVSIPRDIMLEELSHLSNRGARLF
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB6 KLRQMRVEKFIYENHPDVFSDSSMDHFQKFLPTVGGQLGTAGQGFSYSKSNGRGGSQAGG
       :.:: : .:. .::  .  : ....:      ... : : .      . :: .:::: . 
NP_057 KMRQRRSDKYTFENF-QYQSRAQINH------SIAMQNGKV------DGSNLEGGSQQAP
       60        70         80              90             100     

              130       140       150       160       170       180
pF1KB6 SGSAGQYGSDQQHHLGSGSGAGGTGGPAGQAGRGGAAGTAGVGETGSGDQAGGEGKHITV
           .    : .   .  . : : .::  .        ::                   :
NP_057 LTPPNT--PDPRSPPNPDNIAPGYSGPLKEIPPEKFNTTA-------------------V
         110         120       130       140                       

              190       200       210       220       230       240
pF1KB6 FKTYISPWERAMGVDPQQKMELGIDLLAYGAKAELPKYKSFNRTAMPYGGYEKASKRMTF
        : : ::::.:.. ::.    :   :.   .::::: :.::::.: :.::.::::. . :
NP_057 PKYYQSPWEQAISNDPELLEALYPKLFKPEGKAELPDYRSFNRVATPFGGFEKASRMVKF
          150       160       170       180       190       200    

              250        260       270       280       290         
pF1KB6 QMPKFDLGPLLSEPLVL-YNQNLSNRPSFNRTPIPWLSSGEPVDYNVDIGIPLDGETEEL
       ..: :.:  ::..:  . . . ::.: ::::::  :.: . :.  ...   : :  :   
NP_057 KVPDFELL-LLTDPRFMSFVNPLSGRRSFNRTPKGWISENIPIVITTE---PTDDTTVPE
          210        220       230       240       250          260

NP_057 SEDL
           

>>XP_006714297 (OMIM: 605602,613838) PREDICTED: myozenin  (195 aa)
 initn: 362 init1: 225 opt: 225  Z-score: 170.9  bits: 39.0 E(85289): 0.0089
Smith-Waterman score: 297; 32.9% identity (53.5% similar) in 213 aa overlap (11-223:9-187)

               10        20        30        40        50        60
pF1KB6 MPLSGTPAPNKKRKSSKLIMELTGGGQESSGLNLGKKISVPRDVMLEELSLLTNRGSKMF
                 :.::..   .     :.. .:..::::.:.:::.:::::: :.:::...:
XP_006   MLSHNTMMKQRKQQATAIMKEVHGNDVDGMDLGKKVSIPRDIMLEELSHLSNRGARLF
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB6 KLRQMRVEKFIYENHPDVFSDSSMDHFQKFLPTVGGQLGTAGQGFSYSKSNGRGGSQAGG
       :.:: : .:. .::  .  : ....:            . : :. . . :: .:::: . 
XP_006 KMRQRRSDKYTFENF-QYQSRAQINH------------SIAMQNGKVDGSNLEGGSQQAP
       60        70         80                    90       100     

              130       140       150       160       170       180
pF1KB6 SGSAGQYGSDQQHHLGSGSGAGGTGGPAGQAGRGGAAGTAGVGETGSGDQAGGEGKHITV
           .    : .   .  . : : .::  .        ::                   :
XP_006 LTPPNT--PDPRSPPNPDNIAPGYSGPLKEIPPEKFNTTA-------------------V
         110         120       130       140                       

              190       200       210       220       230       240
pF1KB6 FKTYISPWERAMGVDPQQKMELGIDLLAYGAKAELPKYKSFNRTAMPYGGYEKASKRMTF
        : : ::::.:.. ::.    :   :.   .::::: :.::::                 
XP_006 PKYYQSPWEQAISNDPELLEALYPKLFKPEGKAELPDYRSFNRGSRLHWRK         
          150       160       170       180       190              

              250       260       270       280       290         
pF1KB6 QMPKFDLGPLLSEPLVLYNQNLSNRPSFNRTPIPWLSSGEPVDYNVDIGIPLDGETEEL




299 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:49:44 2016 done: Fri Nov  4 22:49:45 2016
 Total Scan time:  7.970 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]