FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6378, 299 aa
  1>>>pF1KB6378 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4936+/-0.00104; mu= 7.6318+/- 0.063
 mean_var=224.8382+/-44.999, 0's: 0 Z-trim(111.5): 37  B-trim: 0 in 0/52
 Lambda= 0.085534
 statistics sampled from 12436 (12462) to 12436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.383), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS7330.1 MYOZ1 gene_id:58529|Hs108|chr10         ( 299) 2013 260.9 8.7e-70


>>CCDS7330.1 MYOZ1 gene_id:58529|Hs108|chr10              (299 aa)
 initn: 2013 init1: 2013 opt: 2013  Z-score: 1366.4  bits: 260.9 E(32554): 8.7e-70
Smith-Waterman score: 2013; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB6 MPLSGTPAPNKKRKSSKLIMELTGGGQESSGLNLGKKISVPRDVMLEELSLLTNRGSKMF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MPLSGTPAPNKKRKSSKLIMELTGGGQESSGLNLGKKISVPRDVMLEELSLLTNRGSKMF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KLRQMRVEKFIYENHPDVFSDSSMDHFQKFLPTVGGQLGTAGQGFSYSKSNGRGGSQAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KLRQMRVEKFIYENHPDVFSDSSMDHFQKFLPTVGGQLGTAGQGFSYSKSNGRGGSQAGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGSAGQYGSDQQHHLGSGSGAGGTGGPAGQAGRGGAAGTAGVGETGSGDQAGGEGKHITV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SGSAGQYGSDQQHHLGSGSGAGGTGGPAGQAGRGGAAGTAGVGETGSGDQAGGEGKHITV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FKTYISPWERAMGVDPQQKMELGIDLLAYGAKAELPKYKSFNRTAMPYGGYEKASKRMTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FKTYISPWERAMGVDPQQKMELGIDLLAYGAKAELPKYKSFNRTAMPYGGYEKASKRMTF
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB6 QMPKFDLGPLLSEPLVLYNQNLSNRPSFNRTPIPWLSSGEPVDYNVDIGIPLDGETEEL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QMPKFDLGPLLSEPLVLYNQNLSNRPSFNRTPIPWLSSGEPVDYNVDIGIPLDGETEEL
              250       260       270       280       290         




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:49:44 2016 done: Fri Nov  4 22:49:44 2016
 Total Scan time:  2.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]