FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6376, 299 aa
  1>>>pF1KB6376 299 - 299 aa - 299 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9276+/-0.000273; mu= 10.2320+/- 0.017
 mean_var=130.5685+/-26.499, 0's: 0 Z-trim(122.4): 13  B-trim: 50 in 1/52
 Lambda= 0.112242
 statistics sampled from 40475 (40488) to 40475 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.475), width:  16
 Scan time:  8.860

The best scores are:                                      opt bits E(85289)
NP_002848 (OMIM: 600279,614886) peroxisomal biogen ( 299) 1967 328.8 7.9e-90
NP_001180573 (OMIM: 600279,614886) peroxisomal bio ( 279) 1785 299.3 5.6e-81


>>NP_002848 (OMIM: 600279,614886) peroxisomal biogenesis  (299 aa)
 initn: 1967 init1: 1967 opt: 1967  Z-score: 1733.7  bits: 328.8 E(85289): 7.9e-90
Smith-Waterman score: 1967; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB6 MAAAEEGCSVGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAAAEEGCSVGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB6 ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM
              250       260       270       280       290         

>>NP_001180573 (OMIM: 600279,614886) peroxisomal biogene  (279 aa)
 initn: 1785 init1: 1785 opt: 1785  Z-score: 1574.9  bits: 299.3 E(85289): 5.6e-81
Smith-Waterman score: 1785; 98.9% identity (99.3% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KB6 MAAAEEGCSVGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAAEEGCSVGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB6 ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM
       :::::::::::::::::::::::::::::::: : .:                      
NP_001 ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMVPVVNSV                    
              250       260       270                             




299 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:09:05 2016 done: Fri Nov  4 18:09:07 2016
 Total Scan time:  8.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]