FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6376, 299 aa
  1>>>pF1KB6376 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3986+/-0.000687; mu= 13.3023+/- 0.042
 mean_var=123.7642+/-24.912, 0's: 0 Z-trim(114.9): 2  B-trim: 737 in 2/50
 Lambda= 0.115286
 statistics sampled from 15411 (15413) to 15411 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.473), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS1201.1 PEX19 gene_id:5824|Hs108|chr1           ( 299) 1967 337.2 8.8e-93


>>CCDS1201.1 PEX19 gene_id:5824|Hs108|chr1                (299 aa)
 initn: 1967 init1: 1967 opt: 1967  Z-score: 1779.2  bits: 337.2 E(32554): 8.8e-93
Smith-Waterman score: 1967; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB6 MAAAEEGCSVGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAAAEEGCSVGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB6 ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM
              250       260       270       280       290         




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:09:05 2016 done: Fri Nov  4 18:09:05 2016
 Total Scan time:  2.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]