Result of FASTA (omim) for
pF1KB6357
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6357, 267 aa
1>>>pF1KB6357 267 - 267 aa - 267 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2243+/-0.000329; mu= 15.5800+/- 0.020
mean_var=69.3202+/-14.583, 0's: 0 Z-trim(115.6): 79 B-trim: 1044 in 1/49
Lambda= 0.154044
statistics sampled from 26066 (26145) to 26066 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.307), width: 16
Scan time: 7.050
The best scores are: opt bits E(85289)
NP_002414 (OMIM: 178990) matrilysin preproprotein ( 267) 1825 414.3 1.2e-115
NP_004762 (OMIM: 604629,612529) matrix metalloprot ( 483) 862 200.4 5e-51
NP_002413 (OMIM: 185250,614466) stromelysin-1 prep ( 477) 845 196.7 6.8e-50
NP_002416 (OMIM: 185260) stromelysin-2 preproprote ( 476) 836 194.7 2.7e-49
NP_002418 (OMIM: 250400,600108,602111) collagenase ( 471) 823 191.8 2e-48
NP_002417 (OMIM: 601046) macrophage metalloelastas ( 470) 817 190.4 5e-48
NP_002412 (OMIM: 120353,226600,606963) interstitia ( 469) 801 186.9 5.9e-47
NP_002415 (OMIM: 120355) neutrophil collagenase is ( 467) 792 184.9 2.4e-46
XP_011541137 (OMIM: 120355) PREDICTED: neutrophil ( 444) 791 184.6 2.6e-46
XP_016873260 (OMIM: 120355) PREDICTED: neutrophil ( 444) 791 184.6 2.6e-46
NP_001291371 (OMIM: 120355) neutrophil collagenase ( 444) 791 184.6 2.6e-46
NP_001291370 (OMIM: 120355) neutrophil collagenase ( 444) 791 184.6 2.6e-46
XP_011541138 (OMIM: 120355) PREDICTED: neutrophil ( 377) 785 183.3 5.8e-46
XP_011541136 (OMIM: 120355) PREDICTED: neutrophil ( 476) 785 183.3 7e-46
NP_001139410 (OMIM: 120353,226600,606963) intersti ( 403) 765 178.8 1.3e-44
NP_068573 (OMIM: 605470) matrix metalloproteinase- ( 261) 675 158.7 9.9e-39
NP_004521 (OMIM: 120360,259600) 72 kDa type IV col ( 660) 659 155.4 2.5e-37
NP_001121363 (OMIM: 120360,259600) 72 kDa type IV ( 610) 627 148.3 3.2e-35
XP_011518521 (OMIM: 605470) PREDICTED: matrix meta ( 191) 597 141.3 1.3e-33
NP_001289437 (OMIM: 120360,259600) 72 kDa type IV ( 584) 588 139.6 1.3e-32
NP_001289439 (OMIM: 120360,259600) 72 kDa type IV ( 584) 588 139.6 1.3e-32
NP_001289438 (OMIM: 120360,259600) 72 kDa type IV ( 584) 588 139.6 1.3e-32
XP_016874796 (OMIM: 602285) PREDICTED: matrix meta ( 434) 554 132.0 1.9e-30
NP_057239 (OMIM: 602285) matrix metalloproteinase- ( 603) 554 132.1 2.4e-30
XP_011536657 (OMIM: 602285) PREDICTED: matrix meta ( 519) 542 129.4 1.4e-29
XP_011536658 (OMIM: 602285) PREDICTED: matrix meta ( 519) 542 129.4 1.4e-29
XP_011536659 (OMIM: 602285) PREDICTED: matrix meta ( 519) 542 129.4 1.4e-29
XP_011526802 (OMIM: 604871) PREDICTED: matrix meta ( 556) 534 127.6 4.9e-29
XP_016883087 (OMIM: 604871) PREDICTED: matrix meta ( 614) 534 127.6 5.3e-29
NP_006681 (OMIM: 604871) matrix metalloproteinase- ( 645) 534 127.6 5.6e-29
NP_002419 (OMIM: 602261) matrix metalloproteinase- ( 669) 519 124.3 5.8e-28
XP_016874798 (OMIM: 601807,611543) PREDICTED: matr ( 366) 507 121.5 2.3e-27
XP_016874797 (OMIM: 601807,611543) PREDICTED: matr ( 387) 507 121.5 2.4e-27
NP_002420 (OMIM: 601807,611543) matrix metalloprot ( 508) 507 121.6 2.9e-27
XP_011520906 (OMIM: 608482) PREDICTED: matrix meta ( 478) 499 119.8 9.6e-27
XP_011520904 (OMIM: 608482) PREDICTED: matrix meta ( 528) 499 119.8 1e-26
NP_071913 (OMIM: 608482) matrix metalloproteinase- ( 562) 499 119.8 1.1e-26
NP_005931 (OMIM: 185261) stromelysin-3 preproprote ( 488) 495 118.9 1.8e-26
NP_005932 (OMIM: 602262) matrix metalloproteinase- ( 607) 488 117.4 6.3e-26
NP_004985 (OMIM: 120361,613073) matrix metalloprot ( 707) 487 117.2 8.3e-26
NP_004986 (OMIM: 277950,600754) matrix metalloprot ( 582) 479 115.4 2.4e-25
XP_016880552 (OMIM: 608417) PREDICTED: matrix meta ( 378) 392 95.9 1.1e-19
XP_016880553 (OMIM: 608417) PREDICTED: matrix meta ( 378) 392 95.9 1.1e-19
XP_016880551 (OMIM: 608417) PREDICTED: matrix meta ( 378) 392 95.9 1.1e-19
XP_011523533 (OMIM: 608417) PREDICTED: matrix meta ( 390) 392 95.9 1.2e-19
NP_116568 (OMIM: 608417) matrix metalloproteinase- ( 393) 392 95.9 1.2e-19
XP_011523532 (OMIM: 608417) PREDICTED: matrix meta ( 418) 392 96.0 1.2e-19
XP_011523531 (OMIM: 608417) PREDICTED: matrix meta ( 435) 392 96.0 1.3e-19
XP_011523529 (OMIM: 608417) PREDICTED: matrix meta ( 435) 392 96.0 1.3e-19
XP_011523530 (OMIM: 608417) PREDICTED: matrix meta ( 435) 392 96.0 1.3e-19
>>NP_002414 (OMIM: 178990) matrilysin preproprotein [Hom (267 aa)
initn: 1825 init1: 1825 opt: 1825 Z-score: 2197.4 bits: 414.3 E(85289): 1.2e-115
Smith-Waterman score: 1825; 99.6% identity (100.0% similar) in 267 aa overlap (1-267:1-267)
10 20 30 40 50 60
pF1KB6 MRLTVLCAVCLLPGSLALPLPQEAGGMSELQWEQAQDYLKRFYLYDSETKNANSLEAKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MRLTVLCAVCLLPGSLALPLPQEAGGMSELQWEQAQDYLKRFYLYDSETKNANSLEAKLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EMQKFFGLPITGMLNSHVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRIVSYTRDL
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_002 EMQKFFGLPITGMLNSRVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRIVSYTRDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 APGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 APGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGD
190 200 210 220 230 240
250 260
pF1KB6 PQNFKLSQDDIKGIQKLYGKRSNSRKK
:::::::::::::::::::::::::::
NP_002 PQNFKLSQDDIKGIQKLYGKRSNSRKK
250 260
>>NP_004762 (OMIM: 604629,612529) matrix metalloproteina (483 aa)
initn: 855 init1: 623 opt: 862 Z-score: 1037.1 bits: 200.4 E(85289): 5e-51
Smith-Waterman score: 862; 51.7% identity (77.8% similar) in 234 aa overlap (35-261:41-273)
10 20 30 40 50
pF1KB6 VLCAVCLLPGSLALPLPQEAGGMSELQWEQAQDYLKRFY-------LYDSETKNANSLEA
:: :: ..: . . ....::.
NP_004 VFLIMALKFSTAAPSLVAASPRTWRNNYRLAQAYLDKYYTNKEGHQIGEMVARGSNSMIR
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB6 KLKEMQKFFGLPITGMLNSHVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRIVSYT
:.::.: :::: .:: :.. ......::::::::::.: :::. ::: ....:::: .::
NP_004 KIKELQAFFGLQVTGKLDQTTMNVIKKPRCGVPDVANYRLFPGEPKWKKNTLTYRISKYT
80 90 100 110 120 130
120 130 140 150 160 170
pF1KB6 RDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLA
.. . ::. : ::. :.. .:: : .. : :::::.: : :::::::::: .:::
NP_004 PSMSSVEVDKAVEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTLA
140 150 160 170 180 190
180 190 200 210 220 230
pF1KB6 HAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYG
:::::: :::::.:::. :.:: :.. :.:.. .:.::.::.::..::.::.:.:::::
NP_004 HAFAPGEGLGGDTHFDNAEKWTMGTN-GFNLFTVAAHEFGHALGLAHSTDPSALMYPTYK
200 210 220 230 240
240 250 260
pF1KB6 NGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
.: .:.: .::.:::: ::: :
NP_004 YKNPYGFHLPKDDVKGIQALYGPRKVFLGKPTLPHAPHHKPSIPDLCDSSSSFDAVTMLG
250 260 270 280 290 300
>>NP_002413 (OMIM: 185250,614466) stromelysin-1 prepropr (477 aa)
initn: 683 init1: 683 opt: 845 Z-score: 1016.7 bits: 196.7 E(85289): 6.8e-50
Smith-Waterman score: 845; 49.3% identity (71.9% similar) in 270 aa overlap (3-264:7-269)
10 20 30 40 50
pF1KB6 MRLTVLC-AVCLLPGSLALPLPQEAGGMSELQWEQAQDYLKRFYLYDSETK-----
: .:: ::: : :: : : . . . .: ::. .: ...:
NP_002 MKSLPILLLLCVAVCS-----AYPLDGAARG-EDTSMNLVQKYLENYYDLKKDVKQFVRR
10 20 30 40 50
60 70 80 90 100
pF1KB6 -NANSLEAKLKEMQKFFGLPITGMLNSHVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVV
... . :..:::::.:: .:: :.: ..:.:.:::::::::... ::. ::: . .
NP_002 KDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMRKPRCGVPDVGHFRTFPGIPKWRKTHL
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 TYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPF
:::::.:: :::. .:: : :::..: . :: : .. : :::::.:: ::: :::
NP_002 TYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPF
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 DGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPN
:::::.::::.::: :..::::::.::.:: .. : :.. .:.::.:::::. ::.. .
NP_002 DGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT-GTNLFLVAAHEIGHSLGLFHSANTE
180 190 200 210 220 230
230 240 250 260
pF1KB6 AVMYPTYGN-GDPQNFKLSQDDIKGIQKLYGKRSNSRKK
:.::: : . : :.::::::.:::.::: .:
NP_002 ALMYPLYHSLTDLTRFRLSQDDINGIQSLYGPPPDSPETPLVPTEPVPPEPGTPANCDPA
240 250 260 270 280 290
NP_002 LSFDAVSTLRGEILIFKDRHFWRKSLRKLEPELHLISSFWPSLPSGVDAAYEVTSKDLVF
300 310 320 330 340 350
>>NP_002416 (OMIM: 185260) stromelysin-2 preproprotein [ (476 aa)
initn: 641 init1: 641 opt: 836 Z-score: 1005.9 bits: 194.7 E(85289): 2.7e-49
Smith-Waterman score: 836; 48.3% identity (74.0% similar) in 265 aa overlap (1-259:2-263)
10 20 30 40 50
pF1KB6 MRLTVLCAVCLLPGSLALPLPQEAGGMSELQWEQAQDYLKRFYLYDSETK-----NANS
:.:. : .:: : : :: :. . . . ::.::...: ....: ..:
NP_002 MMHLAFLVLLCL-PVCSAYPLSG-AAKEEDSNKDLAQQYLEKYYNLEKDVKQFRRKDSNL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 LEAKLKEMQKFFGLPITGMLNSHVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRIV
. :.. ::::.:: .:: :.. ..:.:.:::::::::...: ::. ::: . .:::::
NP_002 IVKKIQGMQKFLGLEVTGKLDTDTLEVMRKPRCGVPDVGHFSSFPGMPKWRKTHLTYRIV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 SYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGN
.:: :::. .:: . :::..: . :: : .. : :::::.:: ::: : :::::.
NP_002 NYTPDLPRDAVDSAIEKALKVWEEVTPLTFSRLYEGEADIMISFAVKEHGDFYSFDGPGH
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 TLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYP
.::::. :: :: :: :::.::.::. .: : :.. .:.::::::::. ::.. .:.:::
NP_002 SLAHAYPPGPGLYGDIHFDDDEKWTEDAS-GTNLFLVAAHELGHSLGLFHSANTEALMYP
180 190 200 210 220 230
240 250 260
pF1KB6 TYGN-GDPQNFKLSQDDIKGIQKLYGKRSNSRKK
:.. . .:.:::::..:::.:::
NP_002 LYNSFTELAQFRLSQDDVNGIQSLYGPPPASTEEPLVPTKSVPSGSEMPAKCDPALSFDA
240 250 260 270 280 290
>>NP_002418 (OMIM: 250400,600108,602111) collagenase 3 p (471 aa)
initn: 655 init1: 601 opt: 823 Z-score: 990.4 bits: 191.8 E(85289): 2e-48
Smith-Waterman score: 823; 48.4% identity (74.6% similar) in 252 aa overlap (17-259:19-267)
10 20 30 40
pF1KB6 MRLTVLCAVCLLPGSLALPLPQEAGG----MSELQWEQAQDYLKRFYLYDS-----ET
::::: .:: .:: . . :. ::. .: . .
NP_002 MHPGVLAAFLFLSWTHCRALPLP--SGGDEDDLSEEDLQFAERYLRSYYHPTNLAGILKE
10 20 30 40 50
50 60 70 80 90 100
pF1KB6 KNANSLEAKLKEMQKFFGLPITGMLNSHVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVV
. :.:. .:.:::.:::: .:: :.......:.:::::::::.::..:: . ::.. .
NP_002 NAASSMTERLREMQSFFGLEVTGKLDDNTLDVMKKPRCGVPDVGEYNVFPRTLKWSKMNL
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB6 TYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPF
:::::.:: :. : :.. .::...:. ::.: .. : :::::.:. ::: :::
NP_002 TYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPF
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB6 DGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPN
:::.. ::::: :: . :::::::.:: ::. :: : :.. .:.::.:::::. ::.::.
NP_002 DGPSGLLAHAFPPGPNYGGDAHFDDDETWTS-SSKGYNLFLVAAHEFGHSLGLDHSKDPG
180 190 200 210 220 230
230 240 250 260
pF1KB6 AVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
:.:.: : ..: : .::..:::.:::
NP_002 ALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPKHPKTPDKCDPSLSLDAITSLR
240 250 260 270 280 290
>>NP_002417 (OMIM: 601046) macrophage metalloelastase pr (470 aa)
initn: 787 init1: 571 opt: 817 Z-score: 983.2 bits: 190.4 E(85289): 5e-48
Smith-Waterman score: 817; 48.3% identity (75.3% similar) in 259 aa overlap (15-265:14-270)
10 20 30 40 50
pF1KB6 MRLTVLCAVCLLPGSLALPLPQEAGGMSELQWEQAQDYLKRFY------LYDSETK-NAN
: :::: . . .. . . .. ::..:: : .. : ..:
NP_002 MKFLLILLLQATASGALPL-NSSTSLEKNNVLFGERYLEKFYGLEINKLPVTKMKYSGN
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 SLEAKLKEMQKFFGLPITGMLNSHVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRI
.. :..:::.:.:: .::.:.. ..:.:. :::::::: .. .:..: : .. .::::
NP_002 LMKEKIQEMQHFLGLKVTGQLDTSTLEMMHAPRCGVPDVHHFREMPGGPVWRKHYITYRI
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 VSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPG
.:: :. . :: . ::...:.. ::.: :. : :::.. :::::::: . ::: :
NP_002 NNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 NTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMY
. :::::.::.:.:::::::::: :: :. : :.. .:.::.:::::.::::::.:::.
NP_002 GILAHAFGPGSGIGGDAHFDEDEFWTTHSG-GTNLFLTAVHEIGHSLGLGHSSDPKAVMF
180 190 200 210 220 230
240 250 260
pF1KB6 PTYGNGDPQNFKLSQDDIKGIQKLYGK-RSNSRKK
::: : ..:.:: :::.:::.::: . :.:
NP_002 PTYKYVDINTFRLSADDIRGIQSLYGDPKENQRLPNPDNSEPALCDPNLSFDAVTTVGNK
240 250 260 270 280 290
NP_002 IFFFKDRFFWLKVSERPKTSVNLISSLWPTLPSGIEAAYEIEARNQVFLFKDDKYWLISN
300 310 320 330 340 350
>>NP_002412 (OMIM: 120353,226600,606963) interstitial co (469 aa)
initn: 777 init1: 609 opt: 801 Z-score: 964.0 bits: 186.9 E(85289): 5.9e-47
Smith-Waterman score: 801; 49.2% identity (74.8% similar) in 242 aa overlap (29-263:28-265)
10 20 30 40 50
pF1KB6 MRLTVLCAVCLLPGSLALPLPQEAGGMSELQWEQAQDYLKRFYLYDSE------TKNANS
: . . .: ::...: .. .:..
NP_002 MHSFPPLLLLLFWGVVSHSFPATLETQEQDVDLVQKYLEKYYNLKNDGRQVEKRRNSGP
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 LEAKLKEMQKFFGLPITGMLNSHVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRIV
. :::.::.:::: .:: .......:..:::::::::.. : ..:.: . .::::
NP_002 VVEKLKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQFVLTEGNPRWEQTHLTYRIE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 SYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGN
.:: :::. ::. . ::...:.. :: : :: : :::::.:.:: : :. ::::::.
NP_002 NYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 TLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYP
.::::: :: :.:::::::::::::.. :. .:.::::::::..::.: .:.:::
NP_002 NLAHAFQPGPGIGGDAHFDEDERWTNNFRE-YNLHRVAAHELGHSLGLSHSTDIGALMYP
180 190 200 210 220 230
240 250 260
pF1KB6 TYG-NGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
.: .:: : :.:::: ::: .::. .:
NP_002 SYTFSGDVQ---LAQDDIDGIQAIYGRSQNPVQPIGPQTPKACDSKLTFDAITTIRGEVM
240 250 260 270 280 290
>>NP_002415 (OMIM: 120355) neutrophil collagenase isofor (467 aa)
initn: 569 init1: 548 opt: 792 Z-score: 953.2 bits: 184.9 E(85289): 2.4e-46
Smith-Waterman score: 792; 50.0% identity (73.9% similar) in 234 aa overlap (36-263:34-266)
10 20 30 40 50
pF1KB6 LCAVCLLPGSLALPLPQEAGGMSELQWEQAQDYLKRFYL-----YDSETKNA-NSLEAKL
::::..:: :.: ::. : . ::
NP_002 LKTLPFLLLLHVQISKAFPVSSKEKNTKTVQDYLEKFYQLPSNQYQSTRKNGTNVIVEKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 KEMQKFFGLPITGMLNSHVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRIVSYTRD
::::.:::: .:: : .....:.:::::::: . . : :..::: .:::: .:: .
NP_002 KEMQRFFGLNVTGKPNEETLDMMKKPRCGVPDSGGFMLTPGNPKWERTNLTYRIRNYTPQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB6 LPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHA
: . :.: .. :...:. :: : .. : ::: :.: . :::. :::::.. ::::
NP_002 LSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGILAHA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB6 FAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNG
: :: :.::::::: .: ::. .: . :.. .:.::.:::::..:::::.:.:::.:.
NP_002 FQPGQGIGGDAHFDAEETWTN-TSANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFR
190 200 210 220 230 240
240 250 260
pF1KB6 DPQNFKLSQDDIKGIQKLYGKRSNSRKK
. .:..: :::: ::: .:: ::
NP_002 ETSNYSLPQDDIDGIQAIYGLSSNPIQPTGPSTPKPCDPSLTFDAITTLRGEILFFKDRY
250 260 270 280 290 300
>>XP_011541137 (OMIM: 120355) PREDICTED: neutrophil coll (444 aa)
initn: 569 init1: 548 opt: 791 Z-score: 952.3 bits: 184.6 E(85289): 2.6e-46
Smith-Waterman score: 791; 48.4% identity (73.8% similar) in 244 aa overlap (27-263:1-243)
10 20 30 40 50
pF1KB6 MRLTVLCAVCLLPGSLALPLPQEAGGMSELQWEQA-QDYLKRFYL-----YDSETKNA-N
:... :.. .:::..:: :.: ::. :
XP_011 MQQIPQEKSINDYLEKFYQLPSNQYQSTRKNGTN
10 20 30
60 70 80 90 100 110
pF1KB6 SLEAKLKEMQKFFGLPITGMLNSHVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRI
. ::::::.:::: .:: : .....:.:::::::: . . : :..::: .::::
XP_011 VIVEKLKEMQRFFGLNVTGKPNEETLDMMKKPRCGVPDSGGFMLTPGNPKWERTNLTYRI
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 VSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPG
.:: .: . :.: .. :...:. :: : .. : ::: :.: . :::. :::::.
XP_011 RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPN
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 NTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMY
. ::::: :: :.::::::: .: ::. .: . :.. .:.::.:::::..:::::.:.::
XP_011 GILAHAFQPGQGIGGDAHFDAEETWTN-TSANYNLFLVAAHEFGHSLGLAHSSDPGALMY
160 170 180 190 200 210
240 250 260
pF1KB6 PTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
:.:. . .:..: :::: ::: .:: ::
XP_011 PNYAFRETSNYSLPQDDIDGIQAIYGLSSNPIQPTGPSTPKPCDPSLTFDAITTLRGEIL
220 230 240 250 260 270
>>XP_016873260 (OMIM: 120355) PREDICTED: neutrophil coll (444 aa)
initn: 569 init1: 548 opt: 791 Z-score: 952.3 bits: 184.6 E(85289): 2.6e-46
Smith-Waterman score: 791; 48.4% identity (73.8% similar) in 244 aa overlap (27-263:1-243)
10 20 30 40 50
pF1KB6 MRLTVLCAVCLLPGSLALPLPQEAGGMSELQWEQA-QDYLKRFYL-----YDSETKNA-N
:... :.. .:::..:: :.: ::. :
XP_016 MQQIPQEKSINDYLEKFYQLPSNQYQSTRKNGTN
10 20 30
60 70 80 90 100 110
pF1KB6 SLEAKLKEMQKFFGLPITGMLNSHVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRI
. ::::::.:::: .:: : .....:.:::::::: . . : :..::: .::::
XP_016 VIVEKLKEMQRFFGLNVTGKPNEETLDMMKKPRCGVPDSGGFMLTPGNPKWERTNLTYRI
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB6 VSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPG
.:: .: . :.: .. :...:. :: : .. : ::: :.: . :::. :::::.
XP_016 RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPN
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 NTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMY
. ::::: :: :.::::::: .: ::. .: . :.. .:.::.:::::..:::::.:.::
XP_016 GILAHAFQPGQGIGGDAHFDAEETWTN-TSANYNLFLVAAHEFGHSLGLAHSSDPGALMY
160 170 180 190 200 210
240 250 260
pF1KB6 PTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
:.:. . .:..: :::: ::: .:: ::
XP_016 PNYAFRETSNYSLPQDDIDGIQAIYGLSSNPIQPTGPSTPKPCDPSLTFDAITTLRGEIL
220 230 240 250 260 270
267 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:00:19 2016 done: Sat Nov 5 08:00:20 2016
Total Scan time: 7.050 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]