FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6343, 264 aa
  1>>>pF1KB6343 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0394+/-0.000858; mu= 4.6970+/- 0.053
 mean_var=172.3722+/-34.352, 0's: 0 Z-trim(113.7): 5  B-trim: 222 in 1/53
 Lambda= 0.097688
 statistics sampled from 14334 (14337) to 14334 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.44), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS3711.1 MYOZ2 gene_id:51778|Hs108|chr4          ( 264) 1789 263.3 1.3e-70


>>CCDS3711.1 MYOZ2 gene_id:51778|Hs108|chr4               (264 aa)
 initn: 1789 init1: 1789 opt: 1789  Z-score: 1381.3  bits: 263.3 E(32554): 1.3e-70
Smith-Waterman score: 1789; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KB6 MLSHNTMMKQRKQQATAIMKEVHGNDVDGMDLGKKVSIPRDIMLEELSHLSNRGARLFKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MLSHNTMMKQRKQQATAIMKEVHGNDVDGMDLGKKVSIPRDIMLEELSHLSNRGARLFKM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RQRRSDKYTFENFQYQSRAQINHSIAMQNGKVDGSNLEGGSQQAPLTPPNTPDPRSPPNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 RQRRSDKYTFENFQYQSRAQINHSIAMQNGKVDGSNLEGGSQQAPLTPPNTPDPRSPPNP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DNIAPGYSGPLKEIPPEKFNTTAVPKYYQSPWEQAISNDPELLEALYPKLFKPEGKAELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 DNIAPGYSGPLKEIPPEKFNTTAVPKYYQSPWEQAISNDPELLEALYPKLFKPEGKAELP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 DYRSFNRVATPFGGFEKASRMVKFKVPDFELLLLTDPRFMSFVNPLSGRRSFNRTPKGWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 DYRSFNRVATPFGGFEKASRMVKFKVPDFELLLLTDPRFMSFVNPLSGRRSFNRTPKGWI
              190       200       210       220       230       240

              250       260    
pF1KB6 SENIPIVITTEPTDDTTVPESEDL
       ::::::::::::::::::::::::
CCDS37 SENIPIVITTEPTDDTTVPESEDL
              250       260    




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:00:31 2016 done: Sat Nov  5 04:00:31 2016
 Total Scan time:  2.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]