FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6310, 280 aa
  1>>>pF1KB6310 280 - 280 aa - 280 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3303+/-0.000803; mu= -0.2204+/- 0.049
 mean_var=246.9819+/-49.296, 0's: 0 Z-trim(117.5): 5  B-trim: 105 in 1/52
 Lambda= 0.081610
 statistics sampled from 18208 (18213) to 18208 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.844), E-opt: 0.2 (0.559), width:  16
 Scan time:  3.010

The best scores are:                                      opt bits E(32554)
CCDS41270.1 FAM131C gene_id:348487|Hs108|chr1      ( 280) 1975 244.3 7.3e-65


>>CCDS41270.1 FAM131C gene_id:348487|Hs108|chr1           (280 aa)
 initn: 1975 init1: 1975 opt: 1975  Z-score: 1277.9  bits: 244.3 E(32554): 7.3e-65
Smith-Waterman score: 1975; 99.3% identity (99.6% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB6 MGSCVSRDLFTSAHKNCPMPQGADPLNPDLPSGRTPTVAPDCVIGKDEQMDFCWDPWQRC
       :::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS41 MGSCVSRDLFTSAHKNCPMPQGADPLNPDLPSGRTPTVAPDCVIGKDKQMDFCWDPWQRC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 FQTTNGYLSDSRSRPGNYNVAALATSSLVGVVQSIKDHITKPTAMARGRVAHLIEWKGWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FQTTNGYLSDSRSRPGNYNVAALATSSLVGVVQSIKDHITKPTAMARGRVAHLIEWKGWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AQRAGWELSPAEDEHYCCLPDELREARFAAGVAEQFAITEATLSAWSSLDEEELHPENSP
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AQPAGWELSPAEDEHYCCLPDELREARFAAGVAEQFAITEATLSAWSSLDEEELHPENSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 QGIVQLQDLESIYLQDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QGIVQLQDLESIYLQDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPE
              190       200       210       220       230       240

              250       260       270       280
pF1KB6 LQHRRRLPGAQGPEGGTHPPGSLPSMDSGSLWEEDEVFYN
       ::::::::::::::::::::::::::::::::::::::::
CCDS41 LQHRRRLPGAQGPEGGTHPPGSLPSMDSGSLWEEDEVFYN
              250       260       270       280




280 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:40:10 2016 done: Fri Nov  4 22:40:10 2016
 Total Scan time:  3.010 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]