Result of FASTA (ccds) for
pF1KB6214
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6214, 725 aa
1>>>pF1KB6214 725 - 725 aa - 725 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5921+/-0.000977; mu= 14.3522+/- 0.059
mean_var=95.7888+/-18.856, 0's: 0 Z-trim(106.8): 24 B-trim: 236 in 1/52
Lambda= 0.131044
statistics sampled from 9198 (9210) to 9198 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.283), width: 16
Scan time: 4.140
The best scores are: opt bits E(32554)
CCDS42801.1 CARF gene_id:79800|Hs108|chr2 ( 725) 4769 912.3 0
CCDS63091.1 CARF gene_id:79800|Hs108|chr2 ( 649) 4111 787.9 0
>>CCDS42801.1 CARF gene_id:79800|Hs108|chr2 (725 aa)
initn: 4769 init1: 4769 opt: 4769 Z-score: 4873.5 bits: 912.3 E(32554): 0
Smith-Waterman score: 4769; 99.9% identity (100.0% similar) in 725 aa overlap (1-725:1-725)
10 20 30 40 50 60
pF1KB6 MEQSNDSLRVNHNDGEESKTSAQVFEHLICMDSRDSSFGQNDSPTVLPITTREANNSLIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MEQSNDSLRVNHNDGEESKTSAQVFEHLICMDSRDSSFGQNDSPTVLPITTREANNSLIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 QNIPGPLTQTQTLSAEQFHLVDQNGQAIQYELQSLGESNAQMMIVASPTENGQVLRVIPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QNIPGPLTQTQTLSAEQFHLVDQNGQAIQYELQSLGESNAQMMIVASPTENGQVLRVIPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TQTGMAQVIIPQGQLVDVNSPRDVPEEKPSNRNLPTVRVDTLADNTSNYILHPQTSFPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TQTGMAQVIIPQGQLVDVNSPRDVPEEKPSNRNLPTVRVDTLADNTSNYILHPQTSFPLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 KKSVTGMLEEPLLGPLQPLSSNTPIWACRLRSCEKIGDSYRGYCVSETELESVLTFHKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KKSVTGMLEEPLLGPLQPLSSNTPIWACRLRSCEKIGDSYRGYCVSETELESVLTFHKQQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 TQSVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAGSRAVVMECQYGPRRKGFQLKKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TQSVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAGSRAVVMECQYGPRRKGFQLKKV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SEQESRSCQLYKATCPARIYIKKVQKFPEYRVPTDPKIDKKIIRMEQEKAFNMLKKNLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SEQESRSCQLYKATCPARIYIKKVQKFPEYRVPTDPKIDKKIIRMEQEKAFNMLKKNLVD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 AGGVLRWYVQLPTQQAHQYHELETPCLTLSPSPFPVSSLEEEETAVRDENCALPSRLHPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AGGVLRWYVQLPTQQAHQYHELETPCLTLSPSPFPVSSLEEEETAVRDENCALPSRLHPQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 VAHKIQELVSQGIEQVYAVRKQLRKFVERELFKPDEVPERHNLSLFPTVNDIKNHIHEVQ
::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS42 VAHKIQELVSQGIEQVYAVRKQLRKFVERELFKPDEVPERHNLSFFPTVNDIKNHIHEVQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 KSLRNGDTVYNSEIIPATLQWTTDSGNILKETMTVTFAEGNSPGESITTKVETNQTRGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KSLRNGDTVYNSEIIPATLQWTTDSGNILKETMTVTFAEGNSPGESITTKVETNQTRGSL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB6 SPEPTHLLSSLSSFQPKIFTQLQGLQLQPRYTSPDESPAVVSVNNQPSSSPSGLLDTIGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SPEPTHLLSSLSSFQPKIFTQLQGLQLQPRYTSPDESPAVVSVNNQPSSSPSGLLDTIGS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB6 AVMNNNSLLLGQSHSLQRDTCLTQNNSTASTMGNLPEPDQNLVAMDELVEVGDVEDTGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AVMNNNSLLLGQSHSLQRDTCLTQNNSTASTMGNLPEPDQNLVAMDELVEVGDVEDTGNL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB6 EGTVHRILLGDVQTIPIQIIDNHSALIEENPESTISVSQVKQEPKEPALSMEAKKTVDYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EGTVHRILLGDVQTIPIQIIDNHSALIEENPESTISVSQVKQEPKEPALSMEAKKTVDYK
670 680 690 700 710 720
pF1KB6 KLSAT
:::::
CCDS42 KLSAT
>>CCDS63091.1 CARF gene_id:79800|Hs108|chr2 (649 aa)
initn: 4108 init1: 4108 opt: 4111 Z-score: 4202.0 bits: 787.9 E(32554): 0
Smith-Waterman score: 4112; 89.4% identity (89.5% similar) in 725 aa overlap (1-725:1-649)
10 20 30 40 50 60
pF1KB6 MEQSNDSLRVNHNDGEESKTSAQVFEHLICMDSRDSSFGQNDSPTVLPITTREANNSLIS
::::::::::::::::::::::::::
CCDS63 MEQSNDSLRVNHNDGEESKTSAQVFE----------------------------------
10 20
70 80 90 100 110 120
pF1KB6 QNIPGPLTQTQTLSAEQFHLVDQNGQAIQYELQSLGESNAQMMIVASPTENGQVLRVIPP
::::::::::::::::::
CCDS63 ------------------------------------------MIVASPTENGQVLRVIPP
30 40
130 140 150 160 170 180
pF1KB6 TQTGMAQVIIPQGQLVDVNSPRDVPEEKPSNRNLPTVRVDTLADNTSNYILHPQTSFPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TQTGMAQVIIPQGQLVDVNSPRDVPEEKPSNRNLPTVRVDTLADNTSNYILHPQTSFPLP
50 60 70 80 90 100
190 200 210 220 230 240
pF1KB6 KKSVTGMLEEPLLGPLQPLSSNTPIWACRLRSCEKIGDSYRGYCVSETELESVLTFHKQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KKSVTGMLEEPLLGPLQPLSSNTPIWACRLRSCEKIGDSYRGYCVSETELESVLTFHKQQ
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB6 TQSVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAGSRAVVMECQYGPRRKGFQLKKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 TQSVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAGSRAVVMECQYGPRRKGFQLKKV
170 180 190 200 210 220
310 320 330 340 350 360
pF1KB6 SEQESRSCQLYKATCPARIYIKKVQKFPEYRVPTDPKIDKKIIRMEQEKAFNMLKKNLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SEQESRSCQLYKATCPARIYIKKVQKFPEYRVPTDPKIDKKIIRMEQEKAFNMLKKNLVD
230 240 250 260 270 280
370 380 390 400 410 420
pF1KB6 AGGVLRWYVQLPTQQAHQYHELETPCLTLSPSPFPVSSLEEEETAVRDENCALPSRLHPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 AGGVLRWYVQLPTQQAHQYHELETPCLTLSPSPFPVSSLEEEETAVRDENCALPSRLHPQ
290 300 310 320 330 340
430 440 450 460 470 480
pF1KB6 VAHKIQELVSQGIEQVYAVRKQLRKFVERELFKPDEVPERHNLSLFPTVNDIKNHIHEVQ
::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS63 VAHKIQELVSQGIEQVYAVRKQLRKFVERELFKPDEVPERHNLSFFPTVNDIKNHIHEVQ
350 360 370 380 390 400
490 500 510 520 530 540
pF1KB6 KSLRNGDTVYNSEIIPATLQWTTDSGNILKETMTVTFAEGNSPGESITTKVETNQTRGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KSLRNGDTVYNSEIIPATLQWTTDSGNILKETMTVTFAEGNSPGESITTKVETNQTRGSL
410 420 430 440 450 460
550 560 570 580 590 600
pF1KB6 SPEPTHLLSSLSSFQPKIFTQLQGLQLQPRYTSPDESPAVVSVNNQPSSSPSGLLDTIGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SPEPTHLLSSLSSFQPKIFTQLQGLQLQPRYTSPDESPAVVSVNNQPSSSPSGLLDTIGS
470 480 490 500 510 520
610 620 630 640 650 660
pF1KB6 AVMNNNSLLLGQSHSLQRDTCLTQNNSTASTMGNLPEPDQNLVAMDELVEVGDVEDTGNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 AVMNNNSLLLGQSHSLQRDTCLTQNNSTASTMGNLPEPDQNLVAMDELVEVGDVEDTGNL
530 540 550 560 570 580
670 680 690 700 710 720
pF1KB6 EGTVHRILLGDVQTIPIQIIDNHSALIEENPESTISVSQVKQEPKEPALSMEAKKTVDYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EGTVHRILLGDVQTIPIQIIDNHSALIEENPESTISVSQVKQEPKEPALSMEAKKTVDYK
590 600 610 620 630 640
pF1KB6 KLSAT
:::::
CCDS63 KLSAT
725 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 07:52:32 2016 done: Sat Nov 5 07:52:33 2016
Total Scan time: 4.140 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]