FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6189, 660 aa
  1>>>pF1KB6189 660 - 660 aa - 660 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2624+/-0.00109; mu= 14.2735+/- 0.065
 mean_var=73.7572+/-14.812, 0's: 0 Z-trim(102.8): 20  B-trim: 400 in 1/49
 Lambda= 0.149339
 statistics sampled from 7106 (7113) to 7106 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.582), E-opt: 0.2 (0.218), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS4367.1 RARS gene_id:5917|Hs108|chr5            ( 660) 4331 943.0       0
CCDS5011.1 RARS2 gene_id:57038|Hs108|chr6          ( 578)  666 153.4 8.2e-37


>>CCDS4367.1 RARS gene_id:5917|Hs108|chr5                 (660 aa)
 initn: 4331 init1: 4331 opt: 4331  Z-score: 5040.9  bits: 943.0 E(32554):    0
Smith-Waterman score: 4331; 99.8% identity (99.8% similar) in 660 aa overlap (1-660:1-660)

               10        20        30        40        50        60
pF1KB6 MDVLVSECSARLLQQEEEIKSLTAEIDRLKNCGCLGASPNLEQLQEENLKLKYRLNILRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MDVLVSECSARLLQQEEEIKSLTAEIDRLKNCGCLGASPNLEQLQEENLKLKYRLNILRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQAKFGDYQCNSAMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQAKFGDYQCNSAMG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ISQMLKTKEQKVNPREIAENITKHLPDNECIEKVEIAGPGFINVHLRKDFVSEQLTSLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ISQMLKTKEQKVNPREIAENITKHLPDNECIEKVEIAGPGFINVHLRKDFVSEQLTSLLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFAGYDVLRLNHVGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFAGYDVLRLNHVGD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 WGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKKRAYQCVVLLQGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WGTQFGMLIAHLQDKFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKKRAYQCVVLLQGK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 NPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKEFEDRGFVQVDDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NPDITKAWKLICDVSRQELNKIYDALDVSLIERGESFYQDRMNDIVKEFEDRGFVQVDDG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 RKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDNGQSVHFQTIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RKIVFVPGCSIPLTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDNGQSVHFQTIF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 AAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFKTRSGETVRLMDLLGEGLKRSMDKLKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFKTRSGETVRLMDLLGEGLKRSMDKLKEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 ERDKVLTAEELNAAQTSVAYGYIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTR
       ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS43 ERDKVLTAEELNAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 IRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IRSIARLANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB6 IYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAVMAKGFDILGIKPVQRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAVMAKGFDILGIKPVQRM
              610       620       630       640       650       660

>>CCDS5011.1 RARS2 gene_id:57038|Hs108|chr6               (578 aa)
 initn: 628 init1: 297 opt: 666  Z-score: 774.3  bits: 153.4 E(32554): 8.2e-37
Smith-Waterman score: 729; 29.3% identity (60.3% similar) in 580 aa overlap (102-660:31-578)

              80        90       100       110       120       130 
pF1KB6 NMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQAKFGDYQCNSAMGISQMLKTKEQK
                                     :  ::. . .:.:    ......:.  ...
CCDS50 MACGFRRAIACQLSRVLNLPPENLITSISAVPISQKEEVADFQ----LSVDSLLEKDNDH
               10        20        30        40            50      

               140       150       160       170        180        
pF1KB6 VNP--REIAENITKHLPDNECIEKVEIAGPGFINVHLRKDFVSEQ-LTSLLVNGVQLPAL
         :  .  :. ....:  .  . ..  .:   .: .. ......  : ... .: .    
CCDS50 SRPDIQVQAKRLAEKLRCDTVVSEIS-TGQRTVNFKINRELLTKTVLQQVIEDGSKYGLK
         60        70        80         90       100       110     

      190             200       210       220       230       240  
pF1KB6 GE------NKKVIVDFSSPNIAKEMHVGHLRSTIIGESISRLFEFAGYDVLRLNHVGDWG
       .:      .::..:.:::::.::..:::::::::::. :. : :  :..:.:.:..::::
CCDS50 SELFSGLPQKKIVVEFSSPNVAKKFHVGHLRSTIIGNFIANLKEALGHQVIRINYLGDWG
         120       130       140       150       160       170     

            250        260       270       280       290       300 
pF1KB6 TQFGMLIAHLQD-KFPDYLTVSPPIGDLQVFYKESKKRFDTEEEFKKRAYQCVVLLQGKN
        :::.: . .:   . . :  .:    ..:. . .:.  : ..   : : .    :.  .
CCDS50 MQFGLLGTGFQLFGYEEKLQSNPLQHLFEVYVQVNKEAAD-DKSVAKAAQEFFQRLELGD
         180       190       200       210        220       230    

             310       320       330        340       350          
pF1KB6 PDITKAWKLICDVSRQELNKIYDALDVSLIER-GESFYQDRMNDIVKEFEDRGFV-QVDD
        .  . :. . :.: .:  ..:  : : . :  :::::... ....: .:..:.. ..  
CCDS50 VQALSLWQKFRDLSIEEYIRVYKRLGVYFDEYSGESFYREKSQEVLKLLESKGLLLKTIK
          240       250       260       270       280       290    

     360       370          380       390       400       410      
pF1KB6 GRKIVFVPGCSIP---LTIVKSDGGYTYDTSDLAAIKQRLFEEKADMIIYVVDNGQSVHF
       :  .: . : . :    :...:::   : : ::::  .:. . . : .:::.:.::. ::
CCDS50 GTAVVDLSGNGDPSSICTVMRSDGTSLYATRDLAAAIDRMDKYNFDTMIYVTDKGQKKHF
          300       310       320       330       340       350    

        420       430       440       450       460       470      
pF1KB6 QTIFAAAQMIGWYDPKVTRVFHAGFGVVLGEDKKKFKTRSGETVRLMDLLGEGLKRSMDK
       : .:   ...: ::  . :  :. :::: :     .::: :... : :.:.:   : ...
CCDS50 QQVFQMLKIMG-YD-WAERCQHVPFGVVQG-----MKTRRGDVTFLEDVLNEIQLRMLQN
          360         370       380            390       400       

        480       490       500       510       520       530      
pF1KB6 LKEKERDKVLTAEELNAAQTSVAYGYIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLY
       .   .  : :   . .: ....:   :.  :..   :.:: ::.:.....::.:...: :
CCDS50 MASIKTTKELKNPQETAERVGLAALIIQ--DFKGLLLSDYKFSWDRVFQSRGDTGVFLQY
       410       420       430         440       450       460     

        540             550       560       570       580       590
pF1KB6 AFTRIRSIAR------LANIDEEMLQKAARETKILLDHEKEWKLGRCILRFPEILQKILD
       . .:..:. .      : ...   ::.   ..  .:.:         .::: :.: :  .
CCDS50 THARLHSLEETFGCGYLNDFNTACLQEP--QSVSILQH---------LLRFDEVLYKSSQ
         470       480       490         500                510    

              600       610       620       630       640       650
pF1KB6 DLFLHTLCDYIYELATAFTEFYDSCYCVEKDRQTGKILKVNMWRMLLCEAVAAVMAKGFD
       :.  . . .:.  :.   .  . .     ::       .:   :. : .:: .:.:.:. 
CCDS50 DFQPRHIVSYLLTLSHLAAVAHKTLQI--KDSPP----EVAGARLHLFKAVRSVLANGMK
          520       530       540             550       560        

              660
pF1KB6 ILGIKPVQRM
       .::: :: ::
CCDS50 LLGITPVCRM
      570        




660 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:45:42 2016 done: Sat Nov  5 13:45:43 2016
 Total Scan time:  3.460 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]