Result of FASTA (ccds) for
pF1KB6188
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6188, 703 aa
1>>>pF1KB6188 703 - 703 aa - 703 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2822+/-0.000856; mu= 3.3426+/- 0.052
mean_var=225.0398+/-45.097, 0's: 0 Z-trim(115.4): 44 B-trim: 165 in 1/55
Lambda= 0.085496
statistics sampled from 15967 (16011) to 15967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.492), width: 16
Scan time: 4.770
The best scores are: opt bits E(32554)
CCDS4737.1 ATF6B gene_id:1388|Hs108|chr6 ( 703) 4718 594.8 1.4e-169
CCDS47408.1 ATF6B gene_id:1388|Hs108|chr6 ( 700) 4677 589.7 4.8e-168
CCDS1235.1 ATF6 gene_id:22926|Hs108|chr1 ( 670) 755 106.0 1.9e-22
>>CCDS4737.1 ATF6B gene_id:1388|Hs108|chr6 (703 aa)
initn: 4718 init1: 4718 opt: 4718 Z-score: 3157.8 bits: 594.8 E(32554): 1.4e-169
Smith-Waterman score: 4718; 100.0% identity (100.0% similar) in 703 aa overlap (1-703:1-703)
10 20 30 40 50 60
pF1KB6 MAELMLLSEIADPTRFFTDNLLSPEDWGLQNSTLYSGLDEVAEEQTQLFRCPEQDVPFDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAELMLLSEIADPTRFFTDNLLSPEDWGLQNSTLYSGLDEVAEEQTQLFRCPEQDVPFDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SSLDVGMDVSPSEPPWELLPIFPDLQVKSEPSSPCSSSSLSSESSRLSTEPSSEALGVGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SSLDVGMDVSPSEPPWELLPIFPDLQVKSEPSSPCSSSSLSSESSRLSTEPSSEALGVGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 VLHVKTESLAPPLCLLGDDPTSSFETVQINVIPTSDDSSDVQTKIEPVSPCSSVNSEASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VLHVKTESLAPPLCLLGDDPTSSFETVQINVIPTSDDSSDVQTKIEPVSPCSSVNSEASL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 LSADSSSQAFIGEEVLEVKTESLSPSGCLLWDVPAPSLGAVQISMGPSLDGSSGKALPTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LSADSSSQAFIGEEVLEVKTESLSPSGCLLWDVPAPSLGAVQISMGPSLDGSSGKALPTR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 KPPLQPKPVVLTTVPMPSRAVPPSTTVLLQSLVQPPPVSPVVLIQGAIRVQPEGPAPSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KPPLQPKPVVLTTVPMPSRAVPPSTTVLLQSLVQPPPVSPVVLIQGAIRVQPEGPAPSLP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 RPERKSIVPAPMPGNSCPPEVDAKLLKRQQRMIKNRESACQSRRKKKEYLQGLEARLQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RPERKSIVPAPMPGNSCPPEVDAKLLKRQQRMIKNRESACQSRRKKKEYLQGLEARLQAV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB6 LADNQQLRRENAALRRRLEALLAENSELKLGSGNRKVVCIMVFLLFIAFNFGPVSISEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LADNQQLRRENAALRRRLEALLAENSELKLGSGNRKVVCIMVFLLFIAFNFGPVSISEPP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB6 SAPISPRMNKGEPQPRRHLLGFSEQEPVQGVEPLQGSSQGPKEPQPSPTDQPSFSNLTAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SAPISPRMNKGEPQPRRHLLGFSEQEPVQGVEPLQGSSQGPKEPQPSPTDQPSFSNLTAF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB6 PGGAKELLLRDLDQLFLSSDCRHFNRTESLRLADELSGWVQRHQRGRRKIPQRAQERQKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGGAKELLLRDLDQLFLSSDCRHFNRTESLRLADELSGWVQRHQRGRRKIPQRAQERQKS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB6 QPRKKSPPVKAVPIQPPGPPERDSVGQLQLYRHPDRSQPAFLDAIDRREDTFYVVSFRRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QPRKKSPPVKAVPIQPPGPPERDSVGQLQLYRHPDRSQPAFLDAIDRREDTFYVVSFRRD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB6 HLLLPAISHNKTSRPKMSLVMPAMAPNETLSGRGAPGDYEEMMQIECEVMDTRVIHIKTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HLLLPAISHNKTSRPKMSLVMPAMAPNETLSGRGAPGDYEEMMQIECEVMDTRVIHIKTS
610 620 630 640 650 660
670 680 690 700
pF1KB6 TVPPSLRKQPSPTPGNATGGPLPVSAASQAHQASHQPLYLNHP
:::::::::::::::::::::::::::::::::::::::::::
CCDS47 TVPPSLRKQPSPTPGNATGGPLPVSAASQAHQASHQPLYLNHP
670 680 690 700
>>CCDS47408.1 ATF6B gene_id:1388|Hs108|chr6 (700 aa)
initn: 4679 init1: 4512 opt: 4677 Z-score: 3130.5 bits: 589.7 E(32554): 4.8e-168
Smith-Waterman score: 4677; 99.4% identity (99.6% similar) in 703 aa overlap (1-703:1-700)
10 20 30 40 50 60
pF1KB6 MAELMLLSEIADPTRFFTDNLLSPEDWGLQNSTLYSGLDEVAEEQTQLFRCPEQDVPFDG
::::::::::::::::::::::::::: .:::::::::::::::::::::::::::::
CCDS47 MAELMLLSEIADPTRFFTDNLLSPEDW---DSTLYSGLDEVAEEQTQLFRCPEQDVPFDG
10 20 30 40 50
70 80 90 100 110 120
pF1KB6 SSLDVGMDVSPSEPPWELLPIFPDLQVKSEPSSPCSSSSLSSESSRLSTEPSSEALGVGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SSLDVGMDVSPSEPPWELLPIFPDLQVKSEPSSPCSSSSLSSESSRLSTEPSSEALGVGE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB6 VLHVKTESLAPPLCLLGDDPTSSFETVQINVIPTSDDSSDVQTKIEPVSPCSSVNSEASL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VLHVKTESLAPPLCLLGDDPTSSFETVQINVIPTSDDSSDVQTKIEPVSPCSSVNSEASL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB6 LSADSSSQAFIGEEVLEVKTESLSPSGCLLWDVPAPSLGAVQISMGPSLDGSSGKALPTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LSADSSSQAFIGEEVLEVKTESLSPSGCLLWDVPAPSLGAVQISMGPSLDGSSGKALPTR
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB6 KPPLQPKPVVLTTVPMPSRAVPPSTTVLLQSLVQPPPVSPVVLIQGAIRVQPEGPAPSLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KPPLQPKPVVLTTVPMPSRAVPPSTTVLLQSLVQPPPVSPVVLIQGAIRVQPEGPAPSLP
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB6 RPERKSIVPAPMPGNSCPPEVDAKLLKRQQRMIKNRESACQSRRKKKEYLQGLEARLQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RPERKSIVPAPMPGNSCPPEVDAKLLKRQQRMIKNRESACQSRRKKKEYLQGLEARLQAV
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB6 LADNQQLRRENAALRRRLEALLAENSELKLGSGNRKVVCIMVFLLFIAFNFGPVSISEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LADNQQLRRENAALRRRLEALLAENSELKLGSGNRKVVCIMVFLLFIAFNFGPVSISEPP
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB6 SAPISPRMNKGEPQPRRHLLGFSEQEPVQGVEPLQGSSQGPKEPQPSPTDQPSFSNLTAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SAPISPRMNKGEPQPRRHLLGFSEQEPVQGVEPLQGSSQGPKEPQPSPTDQPSFSNLTAF
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB6 PGGAKELLLRDLDQLFLSSDCRHFNRTESLRLADELSGWVQRHQRGRRKIPQRAQERQKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGGAKELLLRDLDQLFLSSDCRHFNRTESLRLADELSGWVQRHQRGRRKIPQRAQERQKS
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB6 QPRKKSPPVKAVPIQPPGPPERDSVGQLQLYRHPDRSQPAFLDAIDRREDTFYVVSFRRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QPRKKSPPVKAVPIQPPGPPERDSVGQLQLYRHPDRSQPAFLDAIDRREDTFYVVSFRRD
540 550 560 570 580 590
610 620 630 640 650 660
pF1KB6 HLLLPAISHNKTSRPKMSLVMPAMAPNETLSGRGAPGDYEEMMQIECEVMDTRVIHIKTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HLLLPAISHNKTSRPKMSLVMPAMAPNETLSGRGAPGDYEEMMQIECEVMDTRVIHIKTS
600 610 620 630 640 650
670 680 690 700
pF1KB6 TVPPSLRKQPSPTPGNATGGPLPVSAASQAHQASHQPLYLNHP
:::::::::::::::::::::::::::::::::::::::::::
CCDS47 TVPPSLRKQPSPTPGNATGGPLPVSAASQAHQASHQPLYLNHP
660 670 680 690 700
>>CCDS1235.1 ATF6 gene_id:22926|Hs108|chr1 (670 aa)
initn: 1021 init1: 416 opt: 755 Z-score: 516.3 bits: 106.0 E(32554): 1.9e-22
Smith-Waterman score: 1099; 34.9% identity (60.3% similar) in 702 aa overlap (25-697:25-666)
10 20 30 40 50
pF1KB6 MAELMLLSEIADPTRFFTDNLLSPEDWGLQNSTLYSGLDEVAE-EQTQLFRCPEQ-DVPF
::: .:.:.. : .. .. :: : . :
CCDS12 MGEPAGVAGTMESPFSPGLFHRLDEDW---DSALFAELGYFTDTDELQLEAANETYENNF
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 DGSSLDVGMDVSPSEPP-WEL---LPIFPDLQVKSEPSSPCSSSSLSSESSRLSTEPSSE
: .:: .:. : : :.. . :.... .: :: .::: : : : :.. :
CCDS12 D--NLDFDLDLMPWESDIWDINNQICTVKDIKAEPQPLSP-ASSSYSVSSPR-SVDSYSS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 ALGVGEVLHVKTESLAPPLCLLGDDPTSSFETVQINVIPTSDDSSDVQTKIEPVSPCSSV
. : : : ... : :: : :.. ..:. ... : ..: .::.
CCDS12 TQHVPEELDLSSSSQMSPLSLYGEN-SNSLSSAE----PLKED--------KPVTG----
120 130 140 150
180 190 200 210 220 230
pF1KB6 NSEASLLSADSSSQAFIGEEVLEVKTE-SLSPSGCLLWDVPAPSLGAVQISMGPSLDGSS
... ... .. ..:... :..:. :: :. .: . .
CCDS12 -------PRNKTENGLTPKKKIQVNSKPSIQPKPLLL-----PAAPKTQTNSSVPAKTII
160 170 180 190 200
240 250 260 270 280
pF1KB6 GKALPTRKPPLQPKPVVLTTVPMPSRA----VPPSTTVLLQSLVQPPPVSPVVLIQGAIR
...:: : . .:.. . : :... . :.: ::. : ..::. . :..
CCDS12 IQTVPTLMPLAKQQPII-SLQPAPTKGQTVLLSQPTVVQLQAPGVLPSAQPVLAVAGGVT
210 220 230 240 250 260
290 300 310 320 330 340
pF1KB6 VQPEG-----PAPSLPRPE--RKSIVPAPMPGNSCPPEVDAKLLKRQQRMIKNRESACQS
:. :::: : . :.. . .. : .:.:::::::::::::::
CCDS12 QLPNHVVNVVPAPSANSPVNGKLSVTKPVLQSTMRNVGSDIAVLRRQQRMIKNRESACQS
270 280 290 300 310 320
350 360 370 380 390 400
pF1KB6 RRKKKEYLQGLEARLQAVLADNQQLRRENAALRRRLEALLAENSELKLGSGNRKVVCIMV
:.:::::. ::::::.:.:..:.::..::..:.:.:. ...::..::. : .:.:::.:.
CCDS12 RKKKKEYMLGLEARLKAALSENEQLKKENGTLKRQLDEVVSENQRLKVPSPKRRVVCVMI
330 340 350 360 370 380
410 420 430 440 450 460
pF1KB6 FLLFIAFNFGPVSISEPPSAPISPRMNKGEPQPRRHLLGFSEQEPVQGVEPLQGSSQGPK
: :: .:.::.:. : : ..: .. .. :::::::: .: : .:.:
CCDS12 VLAFIILNYGPMSMLEQDSRRMNPSVSPANQ--RRHLLGFSAKEA-------QDTSDGII
390 400 410 420 430
470 480 490 500 510 520
pF1KB6 EPQPSPTDQPSFSNLTAFPGGAKELLLRDLDQLFLSSD-CRHF-NRTESLRLADELSGWV
. . :. : :: :. ..: . :.. :. . : :::::: :: :::
CCDS12 QKNSYRYDH-SVSNDKAL------MVLTEEPLLYIPPPPCQPLINTTESLRLNHELRGWV
440 450 460 470 480
530 540 550 560 570
pF1KB6 QRHQRGRRKIPQRAQERQKSQ------PRKKSPPVKAVPI-QPPGPPERDSVGQLQLYRH
.::. : : . ....::.. . .. . :: . . :.: ..::.:
CCDS12 HRHEVERTKSRRMTNNQQKTRILQGALEQGSNSQLMAVQYTETTSSISRNSGSELQVYYA
490 500 510 520 530 540
580 590 600 610 620 630
pF1KB6 PDRSQPAFLDAIDRREDTFYVVSFRRDHLLLPAISHNKTSRPKMSLVMPAMAPNET-LSG
:: :..:: :: ::::::::::::::::: .::::.:::::.:.::. ::. ..:
CCDS12 SPRSYQDFFEAIRRRGDTFYVVSFRRDHLLLPATTHNKTTRPKMSIVLPAININENVING
550 560 570 580 590 600
640 650 660 670 680 690
pF1KB6 RGAPGDYEEMMQIECEVMDTRVIHIKTSTVPPSLRKQPSPTPGNATGGPLPVSAASQA-H
. ::: ::::.:.:::::..:::.:.::: :: : .. :.: : ::..: :
CCDS12 Q----DYEVMMQIDCQVMDTRILHIKSSSVPPYLRDQQRNQTNTFFGSP-P--AATEATH
610 620 630 640 650 660
700
pF1KB6 QASHQPLYLNHP
.: :
CCDS12 VVSTIPESLQ
670
703 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:45:01 2016 done: Sat Nov 5 13:45:01 2016
Total Scan time: 4.770 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]