FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6179, 607 aa
  1>>>pF1KB6179 607 - 607 aa - 607 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3874+/-0.000429; mu= 19.1782+/- 0.027
 mean_var=83.5295+/-16.801, 0's: 0 Z-trim(111.0): 38  B-trim: 0 in 0/53
 Lambda= 0.140331
 statistics sampled from 19422 (19457) to 19422 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.583), E-opt: 0.2 (0.228), width:  16
 Scan time:  8.520

The best scores are:                                      opt bits E(85289)
NP_002941 (OMIM: 180470) dolichyl-diphosphooligosa ( 607) 3897 799.6       0


>>NP_002941 (OMIM: 180470) dolichyl-diphosphooligosaccha  (607 aa)
 initn: 3897 init1: 3897 opt: 3897  Z-score: 4266.7  bits: 799.6 E(85289):    0
Smith-Waterman score: 3897; 100.0% identity (100.0% similar) in 607 aa overlap (1-607:1-607)

               10        20        30        40        50        60
pF1KB6 MEAPAAGLFLLLLLGTWAPAPGSASSEAPPLINEDVKRTVDLSSHLAKVTAEVVLAHLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MEAPAAGLFLLLLLGTWAPAPGSASSEAPPLINEDVKRTVDLSSHLAKVTAEVVLAHLGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKSGRFFTVKLPVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLEVRETKIKGKSGRFFTVKLPVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NVESYTKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NVESYTKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHYENNSPFLTITSMTRVIEVSHWG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 NIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRSFKTILPAAAQDVYYRDEIGNV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 STSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 STSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHVF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 DEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 IQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPAAEARMKVACITE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPAAEARMKVACITE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 QVLTLVNKRIGLYRHFDETVNRYKQSRDISTLNSGKKSLETEHKALTSEIALLQSRLKTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QVLTLVNKRIGLYRHFDETVNRYKQSRDISTLNSGKKSLETEHKALTSEIALLQSRLKTE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 GSDLCDRVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GSDLCDRVSEMQKLDAQVKELVLKSAVEAERLVAGKLKKDTYIENEKLISGKRQELVTKI
              550       560       570       580       590       600

              
pF1KB6 DHILDAL
       :::::::
NP_002 DHILDAL
              




607 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:43:00 2016 done: Sat Nov  5 13:43:01 2016
 Total Scan time:  8.520 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]