FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6153, 597 aa
  1>>>pF1KB6153 597 - 597 aa - 597 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8284+/-0.00108; mu= 16.3550+/- 0.065
 mean_var=70.2326+/-14.533, 0's: 0 Z-trim(103.2): 28  B-trim: 248 in 1/46
 Lambda= 0.153040
 statistics sampled from 7286 (7293) to 7286 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.583), E-opt: 0.2 (0.224), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS11269.1 UTP6 gene_id:55813|Hs108|chr17         ( 597) 3958 883.5       0


>>CCDS11269.1 UTP6 gene_id:55813|Hs108|chr17              (597 aa)
 initn: 3958 init1: 3958 opt: 3958  Z-score: 4720.6  bits: 883.5 E(32554):    0
Smith-Waterman score: 3958; 100.0% identity (100.0% similar) in 597 aa overlap (1-597:1-597)

               10        20        30        40        50        60
pF1KB6 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 EINLLELIQRRRTRIGYSFKKDEIENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EINLLELIQRRRTRIGYSFKKDEIENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EYFRMELMHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKGAEFHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EYFRMELMHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKGAEFHV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SLLSIAQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLLSIAQLFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEEQPTTKQAKAV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 EVGRKEERCCAVYEEAVKTLPTEAMWKCYITFCLERFTKKSNSGFLRGKRLERTMTVFRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EVGRKEERCCAVYEEAVKTLPTEAMWKCYITFCLERFTKKSNSGFLRGKRLERTMTVFRK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 AHELKLLSECQYKQLSVSLLCYNFLREALEVAVAGTELFRDSGTMWQLKLQVLIESKSPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AHELKLLSECQYKQLSVSLLCYNFLREALEVAVAGTELFRDSGTMWQLKLQVLIESKSPD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 IAMLFEEAFVHLKPQVCLPLWISWAEWSEGAKSQEDTEAVFKKALLAVIGADSVTLKNKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IAMLFEEAFVHLKPQVCLPLWISWAEWSEGAKSQEDTEAVFKKALLAVIGADSVTLKNKY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 LDWAYRSGGYKKARAVFKSLQESRPFSVDFFRKMIQFEKEQESCNMANIREYYERALREF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDWAYRSGGYKKARAVFKSLQESRPFSVDFFRKMIQFEKEQESCNMANIREYYERALREF
              490       500       510       520       530       540

              550       560       570       580       590       
pF1KB6 GSADSDLWMDYMKEELNHPLGRPENCGQIYWRAMKMLQGESAEAFVAKHAMHQTGHL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSADSDLWMDYMKEELNHPLGRPENCGQIYWRAMKMLQGESAEAFVAKHAMHQTGHL
              550       560       570       580       590       




597 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:37:43 2016 done: Sat Nov  5 13:37:44 2016
 Total Scan time:  3.390 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]