FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6148, 640 aa
  1>>>pF1KB6148 640 - 640 aa - 640 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4354+/-0.000978; mu= -3.3246+/- 0.059
 mean_var=232.2854+/-47.368, 0's: 0 Z-trim(113.2): 12  B-trim: 174 in 1/50
 Lambda= 0.084152
 statistics sampled from 13870 (13878) to 13870 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.426), width:  16
 Scan time:  4.330

The best scores are:                                      opt bits E(32554)
CCDS4080.1 ELL2 gene_id:22936|Hs108|chr5           ( 640) 4233 526.8 3.4e-149
CCDS12380.1 ELL gene_id:8178|Hs108|chr19           ( 621) 1298 170.5 6.1e-42


>>CCDS4080.1 ELL2 gene_id:22936|Hs108|chr5                (640 aa)
 initn: 4233 init1: 4233 opt: 4233  Z-score: 2792.0  bits: 526.8 E(32554): 3.4e-149
Smith-Waterman score: 4233; 100.0% identity (100.0% similar) in 640 aa overlap (1-640:1-640)

               10        20        30        40        50        60
pF1KB6 MAAGGTGGLREEQRYGLSCGRLGQDNITVLHVKLTETAIRALETYQSHKNLIPFRPSIQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MAAGGTGGLREEQRYGLSCGRLGQDNITVLHVKLTETAIRALETYQSHKNLIPFRPSIQF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QGLHGLVKIPKNDPLNEVHNFNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 QGLHGLVKIPKNDPLNEVHNFNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KITVCATNDSYQMTRERMTQAEEESRNRSTKVIKPGGPYVGKRVQIRKAPQAVSDTVPER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KITVCATNDSYQMTRERMTQAEEESRNRSTKVIKPGGPYVGKRVQIRKAPQAVSDTVPER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 KRSTPMNPANTIRKTHSSSTISQRPYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 KRSTPMNPANTIRKTHSSSTISQRPYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 LGAILQQVANLNSKDLSYTLKDYVFKELQRDWPGYSEIDRRSLESVLSRKLNPSQNAAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LGAILQQVANLNSKDLSYTLKDYVFKELQRDWPGYSEIDRRSLESVLSRKLNPSQNAAGT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 SRSESPVCSSRDAVSSPQKRLLDSEFIDPLMNKKARISHLTNRVPPTLNGHLNPTSEKSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SRSESPVCSSRDAVSSPQKRLLDSEFIDPLMNKKARISHLTNRVPPTLNGHLNPTSEKSA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 AGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDSFSQNDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 AGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDSFSQNDS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 IYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQIKKHDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 IYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQIKKHDI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 ETIEEKEEDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIKYIAIVSYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ETIEEKEEDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIKYIAIVSYEQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 RQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 RQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHEEVLQEYQKI
              550       560       570       580       590       600

              610       620       630       640
pF1KB6 KQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS
       ::::::::::::::::::::::::::::::::::::::::
CCDS40 KQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS
              610       620       630       640

>>CCDS12380.1 ELL gene_id:8178|Hs108|chr19                (621 aa)
 initn: 1487 init1: 688 opt: 1298  Z-score: 866.4  bits: 170.5 E(32554): 6.1e-42
Smith-Waterman score: 1883; 47.9% identity (73.6% similar) in 643 aa overlap (9-639:4-620)

               10        20         30        40        50         
pF1KB6 MAAGGTGGLREEQRYGLSCGRLGQDN-ITVLHVKLTETAIRALETYQSHKNLIPFRPSIQ
               :.:.. :::::::... . ..:.:::::..:.::.:.:..... . .::::.
CCDS12      MAALKEDRSYGLSCGRVSDGSKVSVFHVKLTDSALRAFESYRARQDSVSLRPSIR
                    10        20        30        40        50     

      60        70        80        90       100       110         
pF1KB6 FQGLHGLVKIPKNDPLNEVHNFNFYLSNVGKDNPQGSFDCIQQTFSSSGASQLNCLGFIQ
       ::: .: ..::. :   :...:.:::::.:.::::::::::::  :: :  .:.::: ::
CCDS12 FQGSQGHISIPQPDCPAEARTFSFYLSNIGRDNPQGSFDCIQQYVSSHGEVHLDCLGSIQ
          60        70        80        90       100       110     

     120       130       140       150       160       170         
pF1KB6 DKITVCATNDSYQMTRERMTQAEEESRNRSTKVIKPGGPYVGKRVQIRKAPQAVSDTVPE
       ::::::::.:::: .:. :.:::::.:.::. ::: :: :.::.::.::   ...:.:: 
CCDS12 DKITVCATDDSYQKARQSMAQAEEETRSRSAIVIKAGGRYLGKKVQFRKPAPGATDAVPS
         120       130       140       150       160       170     

     180       190            200       210       220       230    
pF1KB6 RKRSTPMNPANTIRKTHSS-----STISQRPYRDRVIHLLALKAYKKPELLARLQKDGVN
       :::.::.: :..:::. .:     : .::::.::::.:::::. :.: ::: ::::::..
CCDS12 RKRATPINLASAIRKSGASAVSGGSGVSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLT
         180       190       200       210       220       230     

          240       250       260       270       280       290    
pF1KB6 QKDKNSLGAILQQVANLNSKDLSYTLKDYVFKELQRDWPGYSEIDRRSLESVLSRKLNPS
       : ::..: ..::::::...:: . ::.: ..:..:.::::::: :.. :. :: :::   
CCDS12 QADKDALDGLLQQVANMSAKDGTCTLQDCMYKDVQKDWPGYSEGDQQLLKRVLVRKLCQP
         240       250       260       270       280       290     

             300       310       320       330       340       350 
pF1KB6 QNAA---GTSRSESPVCSSRDAVSSPQKRLLDSEFIDPLMNKKARISHLTNRVPPTLNGH
       :...   :   . ::      ..: :::::   .::::: ::: ::::.:.:. :..::.
CCDS12 QSTGSLLGDPAASSPPGERGRSASPPQKRLQPPDFIDPLANKKPRISHFTQRAQPAVNGK
         300       310       320       330       340       350     

              360       370       380        390       400         
pF1KB6 LN-PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPIS-HPPQIVNSNSNSPSTPEGRGTQD
       :. :.....    : :::.    :     ::.::   .::.  .        : .  ..:
CCDS12 LGVPNGREALLPTPGPPAS----TDTLSSSTHLPPRLEPPRAHD--------PLADVSND
         360       370           380       390               400   

     410       420       430       440       450       460         
pF1KB6 LPVDSFSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKH
       :   . :  :   :  .    . :    ::   .:  : .: . . : :..: :::::::
CCDS12 L---GHSGRDC--EHGEAAAPAPTVRLGLP---LLTDCAQPSRPHGSPSRSKPKKKSKKH
              410         420          430       440       450     

     470       480       490       500       510       520         
pF1KB6 KEKDQIKKHDIETIEEKEEDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAI-ELPDY
       :.:..  .      .. . .:      .. . ..: .. :..  :..:  :..  : :::
CCDS12 KDKERAAE------DKPRAQLPDCAPATHATPGAPADTPGLNGTCSVSSVPTSTSETPDY
         460             470       480       490       500         

      530       540       550       560       570       580        
pF1KB6 LIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQN
       :.:: :: : ::::.::.::::::.::: ::::.: ..::: .:::: ..:: ::.::..
CCDS12 LLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQGSEEYET
     510       520       530       540       550       560         

      590       600       610       620       630       640
pF1KB6 VHEEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS
       .. ..::::.:::... :: .::.::::::.:::::::::.:.::.: ..: 
CCDS12 TRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAWP
     570       580       590       600       610       620 




640 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:35:40 2016 done: Sat Nov  5 13:35:41 2016
 Total Scan time:  4.330 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]