FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6128, 627 aa
  1>>>pF1KB6128 627 - 627 aa - 627 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3949+/-0.00105; mu= 5.4750+/- 0.063
 mean_var=179.3989+/-36.711, 0's: 0 Z-trim(109.3): 45  B-trim: 63 in 1/53
 Lambda= 0.095756
 statistics sampled from 10793 (10827) to 10793 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.333), width:  16
 Scan time:  4.120

The best scores are:                                      opt bits E(32554)
CCDS14322.1 CCDC22 gene_id:28952|Hs108|chrX        ( 627) 4057 573.2 3.5e-163


>>CCDS14322.1 CCDC22 gene_id:28952|Hs108|chrX             (627 aa)
 initn: 4057 init1: 4057 opt: 4057  Z-score: 3043.1  bits: 573.2 E(32554): 3.5e-163
Smith-Waterman score: 4057; 100.0% identity (100.0% similar) in 627 aa overlap (1-627:1-627)

               10        20        30        40        50        60
pF1KB6 MEEADRILIHSLRQAGTAVPPDVQTLRAFTTELVVEAVVRCLRVINPAVGSGLSPLLPLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEEADRILIHSLRQAGTAVPPDVQTLRAFTTELVVEAVVRCLRVINPAVGSGLSPLLPLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MSARFRLAMSLAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLPTDASEDADQPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSARFRLAMSLAQACMDLGYPLELGYQNFLYPSEPDLRDLLLFLAERLPTDASEDADQPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GDSAILLRAIGSQIRDQLALPWVPPHLRTPKLQHLQGSALQKPFHASRLVVPELSSRGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GDSAILLRAIGSQIRDQLALPWVPPHLRTPKLQHLQGSALQKPFHASRLVVPELSSRGEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 REFQASPLLLPVPTQVPQPVGRVASLLEHHALQLCQQTGRDRPGDEDWVHRTSRLPPQED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 REFQASPLLLPVPTQVPQPVGRVASLLEHHALQLCQQTGRDRPGDEDWVHRTSRLPPQED
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 TRAQRQRLQKQLTEHLRQSWGLLGAPIQARDLGELLQAWGAGAKTGAPKGSRFTHSEKFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TRAQRQRLQKQLTEHLRQSWGLLGAPIQARDLGELLQAWGAGAKTGAPKGSRFTHSEKFT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 FHLEPQAQATQVSDVPATSRRPEQVTWAAQEQELESLREQLEGVNRSIEEVEADMKTLGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FHLEPQAQATQVSDVPATSRRPEQVTWAAQEQELESLREQLEGVNRSIEEVEADMKTLGV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 SFVQAESECRHSKLSTAEREQALRLKSRAVELLPDGTANLAKLQLVVENSAQRVIHLAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SFVQAESECRHSKLSTAEREQALRLKSRAVELLPDGTANLAKLQLVVENSAQRVIHLAGQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 WEKHRVPLLAEYRHLRKLQDCRELESSRRLAEIQELHQSVRAAAEEARRKEEVYKQLMSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WEKHRVPLLAEYRHLRKLQDCRELESSRRLAEIQELHQSVRAAAEEARRKEEVYKQLMSE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 LETLPRDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTFAVTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LETLPRDVSRLAYTQRILEIVGNIRKQKEEITKILSDTKELQKEINSLSGKLDRTFAVTD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 ELVFKDAKKDDAVRKAYKYLAALHENCSQLIQTIEDTGTIMREVRDLEEQIETELGKKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ELVFKDAKKDDAVRKAYKYLAALHENCSQLIQTIEDTGTIMREVRDLEEQIETELGKKTL
              550       560       570       580       590       600

              610       620       
pF1KB6 SNLEKIREDYRALRQENAGLLGRVREA
       :::::::::::::::::::::::::::
CCDS14 SNLEKIREDYRALRQENAGLLGRVREA
              610       620       




627 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:08:22 2016 done: Sat Nov  5 10:08:23 2016
 Total Scan time:  4.120 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]