FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5941, 508 aa
  1>>>pF1KB5941 508 - 508 aa - 508 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1285+/-0.000654; mu= 15.7828+/- 0.040
 mean_var=109.4605+/-22.275, 0's: 0 Z-trim(113.9): 36  B-trim: 0 in 0/53
 Lambda= 0.122587
 statistics sampled from 14486 (14520) to 14486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.446), width:  16
 Scan time:  3.670

The best scores are:                                      opt bits E(32554)
CCDS12260.1 EPOR gene_id:2057|Hs108|chr19          ( 508) 3509 631.0 9.3e-181


>>CCDS12260.1 EPOR gene_id:2057|Hs108|chr19               (508 aa)
 initn: 3509 init1: 3509 opt: 3509  Z-score: 3358.6  bits: 631.0 E(32554): 9.3e-181
Smith-Waterman score: 3509; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)

               10        20        30        40        50        60
pF1KB5 MDHLGASLWPQVGSLCLLLAGAAWAPPPNLPDPKFESKAALLAARGPEELLCFTERLEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDHLGASLWPQVGSLCLLLAGAAWAPPPNLPDPKFESKAALLAARGPEELLCFTERLEDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VCFWEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VCFWEEAASAGVGPGNYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SLLTPSDLDPLILTLSLILVVILVLLTVLALLSHRRALKQKIWPGIPSPESEFEGLFTTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SLLTPSDLDPLILTLSLILVVILVLLTVLALLSHRRALKQKIWPGIPSPESEFEGLFTTH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 KGNFQLWLYQNDGCLWWSPCTPFTEDPPASLEVLSERCWGTMQAVEPGTDDEGPLLEPVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KGNFQLWLYQNDGCLWWSPCTPFTEDPPASLEVLSERCWGTMQAVEPGTDDEGPLLEPVG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 SEHAQDTYLVLDKWLLPRNPPSEDLPGPGGSVDIVAMDEGSEASSCSSALASKPSPEGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SEHAQDTYLVLDKWLLPRNPPSEDLPGPGGSVDIVAMDEGSEASSCSSALASKPSPEGAS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 AASFEYTILDPSSQLLRPWTLCPELPPTPPHLKYLYLVVSDSGISTDYSSGDSQGAQGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AASFEYTILDPSSQLLRPWTLCPELPPTPPHLKYLYLVVSDSGISTDYSSGDSQGAQGGL
              430       440       450       460       470       480

              490       500        
pF1KB5 SDGPYSNPYENSLIPAAEPLPPSYVACS
       ::::::::::::::::::::::::::::
CCDS12 SDGPYSNPYENSLIPAAEPLPPSYVACS
              490       500        




508 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:38:52 2016 done: Sat Nov  5 15:38:53 2016
 Total Scan time:  3.670 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]