FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5937, 508 aa
  1>>>pF1KB5937 508 - 508 aa - 508 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4280+/-0.000382; mu= 17.5830+/- 0.024
 mean_var=74.9209+/-15.341, 0's: 0 Z-trim(113.3): 39  B-trim: 27 in 1/52
 Lambda= 0.148174
 statistics sampled from 22592 (22610) to 22592 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.265), width:  16
 Scan time:  8.440

The best scores are:                                      opt bits E(85289)
NP_004452 (OMIM: 602918) phenylalanine--tRNA ligas ( 508) 3380 732.3  8e-211


>>NP_004452 (OMIM: 602918) phenylalanine--tRNA ligase al  (508 aa)
 initn: 3380 init1: 3380 opt: 3380  Z-score: 3905.9  bits: 732.3 E(85289): 8e-211
Smith-Waterman score: 3380; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)

               10        20        30        40        50        60
pF1KB5 MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 FSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 SQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH
              430       440       450       460       470       480

              490       500        
pF1KB5 KVNLQMVYDSPLCRLDAEPRPPPTQEAA
       ::::::::::::::::::::::::::::
NP_004 KVNLQMVYDSPLCRLDAEPRPPPTQEAA
              490       500        




508 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:37:54 2016 done: Sat Nov  5 15:37:55 2016
 Total Scan time:  8.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]