FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5923, 505 aa
  1>>>pF1KB5923 505 - 505 aa - 505 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0799+/-0.000832; mu= 2.4902+/- 0.050
 mean_var=211.1751+/-42.789, 0's: 0 Z-trim(115.2): 5  B-trim: 7 in 1/51
 Lambda= 0.088258
 statistics sampled from 15789 (15792) to 15789 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.485), width:  16
 Scan time:  3.880

The best scores are:                                      opt bits E(32554)
CCDS855.2 PPM1J gene_id:333926|Hs108|chr1          ( 505) 3463 453.3  3e-127
CCDS44934.1 PPM1H gene_id:57460|Hs108|chr12        ( 514) 1303 178.2 1.9e-44
CCDS46840.1 PPM1M gene_id:132160|Hs108|chr3        ( 247)  831 117.9 1.3e-26


>>CCDS855.2 PPM1J gene_id:333926|Hs108|chr1               (505 aa)
 initn: 3463 init1: 3463 opt: 3463  Z-score: 2398.1  bits: 453.3 E(32554): 3e-127
Smith-Waterman score: 3463; 99.8% identity (100.0% similar) in 505 aa overlap (1-505:1-505)

               10        20        30        40        50        60
pF1KB5 MLNRVRSAVAHLVSSGGAPPPRPKSPDLPNAASAPPAAAPEAPRSPPAKAGSGSATPAKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MLNRVRSAVAHLVSSGGAPPPRPKSPDLPNAASAPPAAAPEAPRSPPAKAGSGSATPAKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VEARASFSRPTFLQLSPGGLRRADDHAGRAVQSPPDTGRRLPWSTGYAEVINAGKSRHNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 VEARASFSRPTFLQLSPGGLRRADDHAGRAVQSPPDTGRRLPWSTGYAEVINAGKSRHNE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DQACCEVVYVEGRRSVTGVPREPSRGQGLCFYYWGLFDGHAGGGAAEMASRLLHRHIREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 DQACCEVVYVEGRRSVTGVPREPSRGQGLCFYYWGLFDGHAGGGAAEMASRLLHRHIREQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LKDLVEILQDPSPPPLCLPTTPGTPDSSDPSHLLGPQSCWSSQKEVSHESLVVGAIENAF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS85 LKDLVEILQDPSPPPLCLPTTPGTPDSSDPSHLLGPQSCWSSQKEVSHESLVVGAVENAF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QLMDEQMARERRGHQVEGGCCALVVIYLLGKVYVANAGDSRAIIVRNGEIIPMSREFTPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QLMDEQMARERRGHQVEGGCCALVVIYLLGKVYVANAGDSRAIIVRNGEIIPMSREFTPE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 TERQRLQLLGFLKPELLGSEFTHLEFPRRVLPKELGQRMLYRDQNMTGWAYKKIELEDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 TERQRLQLLGFLKPELLGSEFTHLEFPRRVLPKELGQRMLYRDQNMTGWAYKKIELEDLR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 FPLVCGEGKKARVMATIGVTRGLGDHSLKVCSSTLPIKPFLSCFPEVRVYDLTQYEHCPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 FPLVCGEGKKARVMATIGVTRGLGDHSLKVCSSTLPIKPFLSCFPEVRVYDLTQYEHCPD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 DVLVLGTDGLWDVTTDCEVAATVDRVLSAYEPNDHSRYTALAQALVLGARGTPRDRGWRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 DVLVLGTDGLWDVTTDCEVAATVDRVLSAYEPNDHSRYTALAQALVLGARGTPRDRGWRL
              430       440       450       460       470       480

              490       500     
pF1KB5 PNNKLGSGDDISVFVIPLGGPGSYS
       :::::::::::::::::::::::::
CCDS85 PNNKLGSGDDISVFVIPLGGPGSYS
              490       500     

>>CCDS44934.1 PPM1H gene_id:57460|Hs108|chr12             (514 aa)
 initn: 1699 init1: 1289 opt: 1303  Z-score: 911.6  bits: 178.2 E(32554): 1.9e-44
Smith-Waterman score: 1694; 55.7% identity (74.5% similar) in 490 aa overlap (45-498:20-507)

           20        30        40        50        60        70    
pF1KB5 SGGAPPPRPKSPDLPNAASAPPAAAPEAPRSPPAKAGSGSATPAKAVEARASFSRPTFLQ
                                     :  .. :.::   .. .  :  ..:: :: 
CCDS44            MLTRVKSAVANFMGGIMAGSSGSEHGGGSCG-GSDLPLRFPYGRPEFLG
                          10        20        30         40        

           80        90       100       110       120       130    
pF1KB5 LSPGGLRRADDHAGRAVQSPPDTGRRLPWSTGYAEVINAGKSRHNEDQACCEVVYVEGRR
       ::   .. . :: .: .    .: :::::.:::::::::::: :::::: :::. :. . 
CCDS44 LSQDEVECSADHIARPILILKET-RRLPWATGYAEVINAGKSTHNEDQASCEVLTVKKKA
       50        60        70         80        90       100       

           140                          150       160       170    
pF1KB5 -SVTGVP-------------------REPSRGQGLCFYYWGLFDGHAGGGAAEMASRLLH
        .::..:                   .: :...:.  .::.:::::::.::: .:::::.
CCDS44 GAVTSTPNRNSSKRRSSLPNGEGLQLKENSESEGVSCHYWSLFDGHAGSGAAVVASRLLQ
       110       120       130       140       150       160       

          180       190        200                      210        
pF1KB5 RHIREQLKDLVEILQDPSP-PPLCLPTTP-GTPDSSD--------------PSHLLGPQS
       .:: :::.:.:.::.. .  :: ::   : .:: .:               :.    : .
CCDS44 HHITEQLQDIVDILKNSAVLPPTCLGEEPENTPANSRTLTRAASLRGGVGAPGSPSTPPT
       170       180       190       200       210       220       

      220       230       240       250       260       270        
pF1KB5 CWSSQKEVSHESLVVGAIENAFQLMDEQMARERRGHQVEGGCCALVVIYLLGKVYVANAG
        . ..:.. :: ::.::.:.::. :: :. ::: .... ::: ::.:: ::::.::::::
CCDS44 RFFTEKKIPHECLVIGALESAFKEMDLQIERERSSYNISGGCTALIVICLLGKLYVANAG
       230       240       250       260       270       280       

      280       290       300       310       320       330        
pF1KB5 DSRAIIVRNGEIIPMSREFTPETERQRLQLLGFLKPELLGSEFTHLEFPRRVLPKELGQR
       ::::::.::::::::: :::::::::::: :.:..:.:::.:::::::::::  ::::..
CCDS44 DSRAIIIRNGEIIPMSSEFTPETERQRLQYLAFMQPHLLGNEFTHLEFPRRVQRKELGKK
       290       300       310       320       330       340       

      340       350       360       370       380       390        
pF1KB5 MLYRDQNMTGWAYKKIELEDLRFPLVCGEGKKARVMATIGVTRGLGDHSLKVCSSTLPIK
       ::::: :::::::: :: :::.:::. :::::::::::::::::::::.::: .:.. ::
CCDS44 MLYRDFNMTGWAYKTIEDEDLKFPLIYGEGKKARVMATIGVTRGLGDHDLKVHDSNIYIK
       350       360       370       380       390       400       

      400       410       420       430       440       450        
pF1KB5 PFLSCFPEVRVYDLTQYEHCPDDVLVLGTDGLWDVTTDCEVAATVDRVLSAYEPNDHSRY
       ::::  ::::.:::..:.:  ::::.:.::::::: .. ::: .. . :   .:.:  ::
CCDS44 PFLSSAPEVRIYDLSKYDHGSDDVLILATDGLWDVLSNEEVAEAITQFLPNCDPDDPHRY
       410       420       430       440       450       460       

      460       470       480       490       500     
pF1KB5 TALAQALVLGARGTPRDRGWRLPNNKLGSGDDISVFVIPLGGPGSYS
       :  :: ::. :::. .:::::. :..:::::::::.::::       
CCDS44 TLAAQDLVMRARGVLKDRGWRISNDRLGSGDDISVYVIPLIHGNKLS
       470       480       490       500       510    

>>CCDS46840.1 PPM1M gene_id:132160|Hs108|chr3             (247 aa)
 initn: 810 init1: 753 opt: 831  Z-score: 591.3  bits: 117.9 E(32554): 1.3e-26
Smith-Waterman score: 831; 51.2% identity (77.4% similar) in 248 aa overlap (258-505:2-244)

       230       240       250       260       270       280       
pF1KB5 HESLVVGAIENAFQLMDEQMARERRGHQVEGGCCALVVIYLLGKVYVANAGDSRAIIVRN
                                     ::: :::.. : ::.:.:::::::::.:: 
CCDS46                              MGGCTALVAVSLQGKLYMANAGDSRAILVRR
                                            10        20        30 

       290       300       310       320       330       340       
pF1KB5 GEIIPMSREFTPETERQRLQLLGFLKPELLGSEFTHLEFPRRVLPKELGQRMLYRDQNMT
        :: :.: ::::::::::.: :.:. ::::..:::.::::::.   .:::..:.::..:.
CCDS46 DEIRPLSFEFTPETERQRIQQLAFVYPELLAGEFTRLEFPRRLKGDDLGQKVLFRDHHMS
              40        50        60        70        80        90 

       350       360       370       380       390       400       
pF1KB5 GWAYKKIELEDLRFPLVCGEGKKARVMATIGVTRGLGDHSLKVCSSTLPIKPFLSCFPEV
       ::.::..:  ::..::. :.:..::...:..:.::::::.:.: .... .::::   :.:
CCDS46 GWSYKRVEKSDLKYPLIHGQGRQARLLGTLAVSRGLGDHQLRVLDTNIQLKPFLLSVPQV
             100       110       120       130       140       150 

       410       420       430       440       450       460       
pF1KB5 RVYDLTQYEHCPDDVLVLGTDGLWDVTTDCEVAATVDRVLSAYEPNDHSRYTALAQALVL
        : :. : :   :::.:..::::::: .. .::  :   : . . . : :.. ::: :. 
CCDS46 TVLDVDQLELQEDDVVVMATDGLWDVLSNEQVAWLVRSFLPGNQEDPH-RFSKLAQMLIH
             160       170       180       190        200       210

       470       480       490       500        
pF1KB5 GARGTPRDRGWRLPNNKLGSGDDISVFVIPLGGPGSYS   
       ...:  .:    : ..   : ::.::::::: . :. :   
CCDS46 STQGK-EDS---LTEEGQVSYDDVSVFVIPLHSQGQESSDH
                  220       230       240       




505 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:35:23 2016 done: Sat Nov  5 15:35:23 2016
 Total Scan time:  3.880 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]