FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5922, 533 aa
  1>>>pF1KB5922 533 - 533 aa - 533 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.4278+/-0.00108; mu= -16.3658+/- 0.065
 mean_var=520.9858+/-106.285, 0's: 0 Z-trim(116.9): 37  B-trim: 0 in 0/54
 Lambda= 0.056190
 statistics sampled from 17579 (17606) to 17579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.541), width:  16
 Scan time:  4.430

The best scores are:                                      opt bits E(32554)
CCDS47339.1 LCP2 gene_id:3937|Hs108|chr5           ( 533) 3729 316.6 4.5e-86


>>CCDS47339.1 LCP2 gene_id:3937|Hs108|chr5                (533 aa)
 initn: 3729 init1: 3729 opt: 3729  Z-score: 1658.8  bits: 316.6 E(32554): 4.5e-86
Smith-Waterman score: 3729; 100.0% identity (100.0% similar) in 533 aa overlap (1-533:1-533)

               10        20        30        40        50        60
pF1KB5 MALRNVPFRSEVLGWDPDSLADYFKKLNYKDCEKAVKKYHIDGARFLNLTENDIQKFPKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MALRNVPFRSEVLGWDPDSLADYFKKLNYKDCEKAVKKYHIDGARFLNLTENDIQKFPKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RVPILSKLSQEINKNEERRSIFTRKPQVPRFPEETESHEEDNGGWSSFEEDDYESPNDDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RVPILSKLSQEINKNEERRSIFTRKPQVPRFPEETESHEEDNGGWSSFEEDDYESPNDDQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DGEDDGDYESPNEEEEAPVEDDADYEPPPSNDEEALQNSILPAKPFPNSNSMYIDRPPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DGEDDGDYESPNEEEEAPVEDDADYEPPPSNDEEALQNSILPAKPFPNSNSMYIDRPPSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 KTPQQPPVPPQRPMAALPPPPAGRNHSPLPPPQTNHEEPSRSRNHKTAKLPAPSIDRSTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KTPQQPPVPPQRPMAALPPPPAGRNHSPLPPPQTNHEEPSRSRNHKTAKLPAPSIDRSTK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 PPLDRSLAPFDREPFTLGKKPPFSDKPSIPAGRSLGEHLPKIQKPPLPPTTERHERSSPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PPLDRSLAPFDREPFTLGKKPPFSDKPSIPAGRSLGEHLPKIQKPPLPPTTERHERSSPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PGKKPPVPKHGWGPDRRENDEDDVHQRPLPQPALLPMSSNTFPSRSTKPSPMNPLPSSHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGKKPPVPKHGWGPDRRENDEDDVHQRPLPQPALLPMSSNTFPSRSTKPSPMNPLPSSHM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 PGAFSESNSSFPQSASLPPYFSQGPSNRPPIRAEGRNFPLPLPNKPRPPSPAEEENSLNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGAFSESNSSFPQSASLPPYFSQGPSNRPPIRAEGRNFPLPLPNKPRPPSPAEEENSLNE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 EWYVSYITRPEAEAALRKINQDGTFLVRDSSKKTTTNPYVLMVLYKDKVYNIQIRYQKES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EWYVSYITRPEAEAALRKINQDGTFLVRDSSKKTTTNPYVLMVLYKDKVYNIQIRYQKES
              430       440       450       460       470       480

              490       500       510       520       530   
pF1KB5 QVYLLGTGLRGKEDFLSVSDIIDYFRKMPLLLIDGKNRGSRYQCTLTHAAGYP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QVYLLGTGLRGKEDFLSVSDIIDYFRKMPLLLIDGKNRGSRYQCTLTHAAGYP
              490       500       510       520       530   




533 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:34:43 2016 done: Sat Nov  5 15:34:44 2016
 Total Scan time:  4.430 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]