FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5902, 525 aa
  1>>>pF1KB5902 525 - 525 aa - 525 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7632+/-0.000347; mu= 4.5964+/- 0.022
 mean_var=236.9676+/-47.060, 0's: 0 Z-trim(122.8): 14  B-trim: 94 in 1/57
 Lambda= 0.083316
 statistics sampled from 41537 (41551) to 41537 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.487), width:  16
 Scan time: 11.390

The best scores are:                                      opt bits E(85289)
NP_002277 (OMIM: 153337) lymphocyte activation gen ( 525) 3691 456.5 9.2e-128
XP_011519258 (OMIM: 153337) PREDICTED: lymphocyte  ( 444) 2514 314.9 3.2e-85


>>NP_002277 (OMIM: 153337) lymphocyte activation gene 3   (525 aa)
 initn: 3691 init1: 3691 opt: 3691  Z-score: 2414.7  bits: 456.5 E(85289): 9.2e-128
Smith-Waterman score: 3691; 100.0% identity (100.0% similar) in 525 aa overlap (1-525:1-525)

               10        20        30        40        50        60
pF1KB5 MWEAQFLGLLFLQPLWVAPVKPLQPGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MWEAQFLGLLFLQPLWVAPVKPLQPGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRRAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VTWQHQPDSGPPAAAPGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VTWQHQPDSGPPAAAPGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QLDERGRQRGDFSLWLRPARRADAGEYRAAVHLRDRALSCRLRLRLGQASMTASPPGSLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QLDERGRQRGDFSLWLRPARRADAGEYRAAVHLRDRALSCRLRLRLGQASMTASPPGSLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ASDWVILNCSFSRPDRPASVHWFRNRGQGRVPVRESPHHHLAESFLFLPQVSPMDSGPWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ASDWVILNCSFSRPDRPASVHWFRNRGQGRVPVRESPHHHLAESFLFLPQVSPMDSGPWG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 CILTYRDGFNVSIMYNLTVLGLEPPTPLTVYAGAGSRVGLPCRLPAGVGTRSFLTAKWTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CILTYRDGFNVSIMYNLTVLGLEPPTPLTVYAGAGSRVGLPCRLPAGVGTRSFLTAKWTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PGGGPDLLVTGDNGDFTLRLEDVSQAQAGTYTCHIHLQEQQLNATVTLAIITVTPKSFGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PGGGPDLLVTGDNGDFTLRLEDVSQAQAGTYTCHIHLQEQQLNATVTLAIITVTPKSFGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 PGSLGKLLCEVTPVSGQERFVWSSLDTPSQRSFSGPWLEAQEAQLLSQPWQCQLYQGERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PGSLGKLLCEVTPVSGQERFVWSSLDTPSQRSFSGPWLEAQEAQLLSQPWQCQLYQGERL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LGAAVYFTELSSPGAQRSGRAPGALPAGHLLLFLILGVLSLLLLVTGAFGFHLWRRQWRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LGAAVYFTELSSPGAQRSGRAPGALPAGHLLLFLILGVLSLLLLVTGAFGFHLWRRQWRP
              430       440       450       460       470       480

              490       500       510       520     
pF1KB5 RRFSALEQGIHPPQAQSKIEELEQEPEPEPEPEPEPEPEPEPEQL
       :::::::::::::::::::::::::::::::::::::::::::::
NP_002 RRFSALEQGIHPPQAQSKIEELEQEPEPEPEPEPEPEPEPEPEQL
              490       500       510       520     

>>XP_011519258 (OMIM: 153337) PREDICTED: lymphocyte acti  (444 aa)
 initn: 2639 init1: 2510 opt: 2514  Z-score: 1651.0  bits: 314.9 E(85289): 3.2e-85
Smith-Waterman score: 2961; 84.6% identity (84.6% similar) in 525 aa overlap (1-525:1-444)

               10        20        30        40        50        60
pF1KB5 MWEAQFLGLLFLQPLWVAPVKPLQPGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MWEAQFLGLLFLQPLWVAPVKPLQPGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRRAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VTWQHQPDSGPPAAAPGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VTWQHQPDSGPPAAAPGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QLDERGRQRGDFSLWLRPARRADAGEYRAAVHLRDRALSCRLRLRLGQASMTASPPGSLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLDERGRQRGDFSLWLRPARRADAGEYRAAVHLRDRALSCRLRLRLGQASMTASPPGSLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ASDWVILNCSFSRPDRPASVHWFRNRGQGRVPVRESPHHHLAESFLFLPQVSPMDSGPWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASDWVILNCSFSRPDRPASVHWFRNRGQGRVPVRESPHHHLAESFLFLPQVSPMDSGPWG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 CILTYRDGFNVSIMYNLTVLGLEPPTPLTVYAGAGSRVGLPCRLPAGVGTRSFLTAKWTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CILTYRDGFNVSIMYNLTVLGLEPPTPLTVYAGAGSRVGLPCRLPAGVGTRSFLTAKWTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PGGGPDLLVTGDNGDFTLRLEDVSQAQAGTYTCHIHLQEQQLNATVTLAIITVTPKSFGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
XP_011 PGGGPDLLVTGDNGDFTLRLEDVSQAQAGTYTCHIHLQEQQLNATVTLAIIT--------
              310       320       330       340       350          

              370       380       390       400       410       420
pF1KB5 PGSLGKLLCEVTPVSGQERFVWSSLDTPSQRSFSGPWLEAQEAQLLSQPWQCQLYQGERL
                                                                   
XP_011 ------------------------------------------------------------
                                                                   

              430       440       450       460       470       480
pF1KB5 LGAAVYFTELSSPGAQRSGRAPGALPAGHLLLFLILGVLSLLLLVTGAFGFHLWRRQWRP
                    :::::::::::::::::::::::::::::::::::::::::::::::
XP_011 -------------GAQRSGRAPGALPAGHLLLFLILGVLSLLLLVTGAFGFHLWRRQWRP
                         360       370       380       390         

              490       500       510       520     
pF1KB5 RRFSALEQGIHPPQAQSKIEELEQEPEPEPEPEPEPEPEPEPEQL
       :::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRFSALEQGIHPPQAQSKIEELEQEPEPEPEPEPEPEPEPEPEQL
     400       410       420       430       440    




525 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:30:05 2016 done: Sat Nov  5 15:30:07 2016
 Total Scan time: 11.390 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]