FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5902, 525 aa
  1>>>pF1KB5902 525 - 525 aa - 525 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8157+/-0.000837; mu= 10.4587+/- 0.051
 mean_var=217.9536+/-44.578, 0's: 0 Z-trim(115.4): 10  B-trim: 851 in 1/53
 Lambda= 0.086874
 statistics sampled from 15991 (16000) to 15991 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.491), width:  16
 Scan time:  4.120

The best scores are:                                      opt bits E(32554)
CCDS8561.1 LAG3 gene_id:3902|Hs108|chr12           ( 525) 3691 475.1 8.6e-134


>>CCDS8561.1 LAG3 gene_id:3902|Hs108|chr12                (525 aa)
 initn: 3691 init1: 3691 opt: 3691  Z-score: 2515.4  bits: 475.1 E(32554): 8.6e-134
Smith-Waterman score: 3691; 100.0% identity (100.0% similar) in 525 aa overlap (1-525:1-525)

               10        20        30        40        50        60
pF1KB5 MWEAQFLGLLFLQPLWVAPVKPLQPGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MWEAQFLGLLFLQPLWVAPVKPLQPGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRRAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VTWQHQPDSGPPAAAPGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 VTWQHQPDSGPPAAAPGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QLDERGRQRGDFSLWLRPARRADAGEYRAAVHLRDRALSCRLRLRLGQASMTASPPGSLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 QLDERGRQRGDFSLWLRPARRADAGEYRAAVHLRDRALSCRLRLRLGQASMTASPPGSLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ASDWVILNCSFSRPDRPASVHWFRNRGQGRVPVRESPHHHLAESFLFLPQVSPMDSGPWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 ASDWVILNCSFSRPDRPASVHWFRNRGQGRVPVRESPHHHLAESFLFLPQVSPMDSGPWG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 CILTYRDGFNVSIMYNLTVLGLEPPTPLTVYAGAGSRVGLPCRLPAGVGTRSFLTAKWTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 CILTYRDGFNVSIMYNLTVLGLEPPTPLTVYAGAGSRVGLPCRLPAGVGTRSFLTAKWTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PGGGPDLLVTGDNGDFTLRLEDVSQAQAGTYTCHIHLQEQQLNATVTLAIITVTPKSFGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 PGGGPDLLVTGDNGDFTLRLEDVSQAQAGTYTCHIHLQEQQLNATVTLAIITVTPKSFGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 PGSLGKLLCEVTPVSGQERFVWSSLDTPSQRSFSGPWLEAQEAQLLSQPWQCQLYQGERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 PGSLGKLLCEVTPVSGQERFVWSSLDTPSQRSFSGPWLEAQEAQLLSQPWQCQLYQGERL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LGAAVYFTELSSPGAQRSGRAPGALPAGHLLLFLILGVLSLLLLVTGAFGFHLWRRQWRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 LGAAVYFTELSSPGAQRSGRAPGALPAGHLLLFLILGVLSLLLLVTGAFGFHLWRRQWRP
              430       440       450       460       470       480

              490       500       510       520     
pF1KB5 RRFSALEQGIHPPQAQSKIEELEQEPEPEPEPEPEPEPEPEPEQL
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS85 RRFSALEQGIHPPQAQSKIEELEQEPEPEPEPEPEPEPEPEPEQL
              490       500       510       520     




525 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:30:05 2016 done: Sat Nov  5 15:30:05 2016
 Total Scan time:  4.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]