FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5880, 496 aa
  1>>>pF1KB5880 496 - 496 aa - 496 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5861+/-0.000844; mu= 12.6223+/- 0.051
 mean_var=106.1530+/-20.743, 0's: 0 Z-trim(109.9): 13  B-trim: 0 in 0/51
 Lambda= 0.124482
 statistics sampled from 11203 (11207) to 11203 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.344), width:  16
 Scan time:  2.980

The best scores are:                                      opt bits E(32554)
CCDS11494.1 NMT1 gene_id:4836|Hs108|chr17          ( 496) 3374 616.6 1.9e-176
CCDS7109.1 NMT2 gene_id:9397|Hs108|chr10           ( 498) 2454 451.4 1.1e-126
CCDS76284.1 NMT2 gene_id:9397|Hs108|chr10          ( 485) 2373 436.8 2.5e-122


>>CCDS11494.1 NMT1 gene_id:4836|Hs108|chr17               (496 aa)
 initn: 3374 init1: 3374 opt: 3374  Z-score: 3281.1  bits: 616.6 E(32554): 1.9e-176
Smith-Waterman score: 3374; 100.0% identity (100.0% similar) in 496 aa overlap (1-496:1-496)

               10        20        30        40        50        60
pF1KB5 MADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQFW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGVLKELYTLLNENY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 VEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISAIPANIHIYDTEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 KMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLPKPVGTCRYWHRS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPVVHQLLTRYLKQF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 HLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIMNHPTHKSLKAAY
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 SFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYN
              430       440       450       460       470       480

              490      
pF1KB5 WKCPSMGAEKVGLVLQ
       ::::::::::::::::
CCDS11 WKCPSMGAEKVGLVLQ
              490      

>>CCDS7109.1 NMT2 gene_id:9397|Hs108|chr10                (498 aa)
 initn: 2573 init1: 2387 opt: 2454  Z-score: 2388.2  bits: 451.4 E(32554): 1.1e-126
Smith-Waterman score: 2519; 73.2% identity (88.6% similar) in 508 aa overlap (1-496:1-498)

               10        20        30         40        50         
pF1KB5 MADESETAVKPPAPPLPQMMEGNGNGHEHCS-DCENEEDNSYNRGGLSPANDTGAKKKKK
       ::..::.:..  .  :        . .. :. : .:::.. . .:  ::..  :::::::
CCDS71 MAEDSESAASQQSLEL--------DDQDTCGIDGDNEEETEHAKG--SPGGYLGAKKKKK
               10                20        30          40        50

      60            70               80        90       100        
pF1KB5 KQKKKKEK----GSETDSAQD-------QPVKMNSLPAERIQEIQKAIELFSVGQGPAKT
       :::.::::    :...:::.:       :: :  :.: ...:.::.:.::.:. ::::..
CCDS71 KQKRKKEKPNSGGTKSDSASDSQEIKIQQPSKNPSVPMQKLQDIQRAMELLSACQGPARN
               60        70        80        90       100       110

      110       120       130       140       150       160        
pF1KB5 MEEASKRSYQFWDTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGV
       ..::.:. :::::::::::: ::...:: .::::::.:::::.::::: ::.:::.:  :
CCDS71 IDEAAKHRYQFWDTQPVPKLDEVITSHGAIEPDKDNVRQEPYSLPQGFMWDTLDLSDAEV
              120       130       140       150       160       170

      170       180       190       200       210       220        
pF1KB5 LKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISA
       ::::::::::::::::::::::::::::::::::::::: :::::::: :..::::::::
CCDS71 LKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKLVGFISA
              180       190       200       210       220       230

      230       240       250       260       270       280        
pF1KB5 IPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLP
       :::::.:::. ::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS71 IPANIRIYDSVKKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLP
              240       250       260       270       280       290

      290       300       310       320       330       340        
pF1KB5 KPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPV
       ::..::::::::::::::.::::::::::::.::::::::::.. ::.:::::: :::  
CCDS71 KPIATCRYWHRSLNPRKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPMEPKDIKS
              300       310       320       330       340       350

      350       360       370       380       390       400        
pF1KB5 VHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIM
       :..:.. :::::::.:::..::: ::: :.:.::::::::. ::..::::::::::::.:
CCDS71 VRELINTYLKQFHLAPVMDEEEVAHWFLPREHIIDTFVVESPNGKLTDFLSFYTLPSTVM
              360       370       380       390       400       410

      410       420       430       440       450       460        
pF1KB5 NHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFG
       .::.::::::::::::.::.:::::::::::.::: ::::::::::::::::::::::::
CCDS71 HHPAHKSLKAAYSFYNIHTETPLLDLMSDALILAKSKGFDVFNALDLMENKTFLEKLKFG
              420       430       440       450       460       470

      470       480       490      
pF1KB5 IGDGNLQYYLYNWKCPSMGAEKVGLVLQ
       :::::::::::::.::.  .::::::::
CCDS71 IGDGNLQYYLYNWRCPGTDSEKVGLVLQ
              480       490        

>>CCDS76284.1 NMT2 gene_id:9397|Hs108|chr10               (485 aa)
 initn: 2370 init1: 2370 opt: 2373  Z-score: 2309.7  bits: 436.8 E(32554): 2.5e-122
Smith-Waterman score: 2373; 80.1% identity (94.1% similar) in 422 aa overlap (75-496:65-485)

           50        60        70        80        90       100    
pF1KB5 GLSPANDTGAKKKKKKQKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQG
                                     ..:: .  :.: ...:.::.:.::.:. ::
CCDS76 EAPSQTRHLIPRRLKFSSLRNTTPSGSRFQREQPWN-PSVPMQKLQDIQRAMELLSACQG
           40        50        60        70         80        90   

          110       120       130       140       150       160    
pF1KB5 PAKTMEEASKRSYQFWDTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLG
       ::....::.:. :::::::::::: ::...:: .::::::.:::::.::::: ::.:::.
CCDS76 PARNIDEAAKHRYQFWDTQPVPKLDEVITSHGAIEPDKDNVRQEPYSLPQGFMWDTLDLS
           100       110       120       130       140       150   

          170       180       190       200       210       220    
pF1KB5 DRGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVG
       :  :::::::::::::::::::::::::::::::::::::::: :::::::: :..::::
CCDS76 DAEVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKLVG
           160       170       180       190       200       210   

          230       240       250       260       270       280    
pF1KB5 FISAIPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAG
       :::::::::.:::. ::::::::::::::::::::::::::::::::.::::::::::::
CCDS76 FISAIPANIRIYDSVKKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAG
           220       230       240       250       260       270   

          290       300       310       320       330       340    
pF1KB5 VVLPKPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETK
       ::::::..::::::::::::::.::::::::::::.::::::::::.. ::.:::::: :
CCDS76 VVLPKPIATCRYWHRSLNPRKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPMEPK
           280       290       300       310       320       330   

          350       360       370       380       390       400    
pF1KB5 DIPVVHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLP
       ::  :..:.. :::::::.:::..::: ::: :.:.::::::::. ::..::::::::::
CCDS76 DIKSVRELINTYLKQFHLAPVMDEEEVAHWFLPREHIIDTFVVESPNGKLTDFLSFYTLP
           340       350       360       370       380       390   

          410       420       430       440       450       460    
pF1KB5 STIMNHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEK
       ::.:.::.::::::::::::.::.:::::::::::.::: ::::::::::::::::::::
CCDS76 STVMHHPAHKSLKAAYSFYNIHTETPLLDLMSDALILAKSKGFDVFNALDLMENKTFLEK
           400       410       420       430       440       450   

          470       480       490      
pF1KB5 LKFGIGDGNLQYYLYNWKCPSMGAEKVGLVLQ
       :::::::::::::::::.::.  .::::::::
CCDS76 LKFGIGDGNLQYYLYNWRCPGTDSEKVGLVLQ
           460       470       480     




496 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:35:43 2016 done: Sat Nov  5 10:35:43 2016
 Total Scan time:  2.980 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]