FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5876, 495 aa
  1>>>pF1KB5876 495 - 495 aa - 495 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9398+/-0.000362; mu= -5.1998+/- 0.023
 mean_var=352.2367+/-72.270, 0's: 0 Z-trim(124.2): 1  B-trim: 0 in 0/58
 Lambda= 0.068337
 statistics sampled from 45551 (45552) to 45551 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.534), width:  16
 Scan time: 11.830

The best scores are:                                      opt bits E(85289)
NP_036477 (OMIM: 604354) nuclear fragile X mental  ( 495) 3440 352.6 1.5e-96


>>NP_036477 (OMIM: 604354) nuclear fragile X mental reta  (495 aa)
 initn: 3440 init1: 3440 opt: 3440  Z-score: 1854.4  bits: 352.6 E(85289): 1.5e-96
Smith-Waterman score: 3440; 99.8% identity (99.8% similar) in 495 aa overlap (1-495:1-495)

               10        20        30        40        50        60
pF1KB5 MAEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDRWMFWAMLPPPPPPLTSSLPAAGSK
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
NP_036 MAEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RQSSDRFPRHQKSFNPAVKNSYYPRKYDAKFTDFSLPPSRKQKKKKRKEPVFHFFCDTCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RQSSDRFPRHQKSFNPAVKNSYYPRKYDAKFTDFSLPPSRKQKKKKRKEPVFHFFCDTCD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 RGFKNQEKYDKHMSEHTKCPELDCSFTAHEKIVQFHWRNMHAPGMKKIKLDTPEEIARWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RGFKNQEKYDKHMSEHTKCPELDCSFTAHEKIVQFHWRNMHAPGMKKIKLDTPEEIARWR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 EERRKNYPTLANIERKKKLKLEKEKRGAVLTTTQYGKMKGMSRHSQMAKIRSPGKNHKWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EERRKNYPTLANIERKKKLKLEKEKRGAVLTTTQYGKMKGMSRHSQMAKIRSPGKNHKWK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 NDNSRQRAVTGSGSHLCDLKLEGPPEANADPLGVLINSDSESDKEEKPQHSVIPKEVTPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 NDNSRQRAVTGSGSHLCDLKLEGPPEANADPLGVLINSDSESDKEEKPQHSVIPKEVTPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 LCSLMSSYGSLSGSESEPEETPIKTEADVLAENQVLDSSAPKSPSQDVKATVRNFSEAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LCSLMSSYGSLSGSESEPEETPIKTEADVLAENQVLDSSAPKSPSQDVKATVRNFSEAKS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 ENRKKSFEKTNPKRKKDYHNYQTLFEPRTHHPYLLEMLLAPDIRHERNVILQCVRYIIKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ENRKKSFEKTNPKRKKDYHNYQTLFEPRTHHPYLLEMLLAPDIRHERNVILQCVRYIIKK
              430       440       450       460       470       480

              490     
pF1KB5 DFFGLDTNSAKSKDV
       :::::::::::::::
NP_036 DFFGLDTNSAKSKDV
              490     




495 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:36:18 2016 done: Sat Nov  5 18:36:19 2016
 Total Scan time: 11.830 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]