FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5876, 495 aa
  1>>>pF1KB5876 495 - 495 aa - 495 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.1799+/-0.000905; mu= -6.8336+/- 0.055
 mean_var=317.1714+/-65.062, 0's: 0 Z-trim(116.4): 4  B-trim: 13 in 1/51
 Lambda= 0.072016
 statistics sampled from 17019 (17021) to 17019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.523), width:  16
 Scan time:  3.680

The best scores are:                                      opt bits E(32554)
CCDS9393.1 NUFIP1 gene_id:26747|Hs108|chr13        ( 495) 3440 370.6 2.2e-102


>>CCDS9393.1 NUFIP1 gene_id:26747|Hs108|chr13             (495 aa)
 initn: 3440 init1: 3440 opt: 3440  Z-score: 1951.5  bits: 370.6 E(32554): 2.2e-102
Smith-Waterman score: 3440; 99.8% identity (99.8% similar) in 495 aa overlap (1-495:1-495)

               10        20        30        40        50        60
pF1KB5 MAEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDRWMFWAMLPPPPPPLTSSLPAAGSK
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS93 MAEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 PSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 PSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RQSSDRFPRHQKSFNPAVKNSYYPRKYDAKFTDFSLPPSRKQKKKKRKEPVFHFFCDTCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 RQSSDRFPRHQKSFNPAVKNSYYPRKYDAKFTDFSLPPSRKQKKKKRKEPVFHFFCDTCD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 RGFKNQEKYDKHMSEHTKCPELDCSFTAHEKIVQFHWRNMHAPGMKKIKLDTPEEIARWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 RGFKNQEKYDKHMSEHTKCPELDCSFTAHEKIVQFHWRNMHAPGMKKIKLDTPEEIARWR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 EERRKNYPTLANIERKKKLKLEKEKRGAVLTTTQYGKMKGMSRHSQMAKIRSPGKNHKWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 EERRKNYPTLANIERKKKLKLEKEKRGAVLTTTQYGKMKGMSRHSQMAKIRSPGKNHKWK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 NDNSRQRAVTGSGSHLCDLKLEGPPEANADPLGVLINSDSESDKEEKPQHSVIPKEVTPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 NDNSRQRAVTGSGSHLCDLKLEGPPEANADPLGVLINSDSESDKEEKPQHSVIPKEVTPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 LCSLMSSYGSLSGSESEPEETPIKTEADVLAENQVLDSSAPKSPSQDVKATVRNFSEAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 LCSLMSSYGSLSGSESEPEETPIKTEADVLAENQVLDSSAPKSPSQDVKATVRNFSEAKS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 ENRKKSFEKTNPKRKKDYHNYQTLFEPRTHHPYLLEMLLAPDIRHERNVILQCVRYIIKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 ENRKKSFEKTNPKRKKDYHNYQTLFEPRTHHPYLLEMLLAPDIRHERNVILQCVRYIIKK
              430       440       450       460       470       480

              490     
pF1KB5 DFFGLDTNSAKSKDV
       :::::::::::::::
CCDS93 DFFGLDTNSAKSKDV
              490     




495 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:36:17 2016 done: Sat Nov  5 18:36:17 2016
 Total Scan time:  3.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]