Result of FASTA (ccds) for
pF1KB5858
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5858, 490 aa
1>>>pF1KB5858 490 - 490 aa - 490 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4193+/-0.00107; mu= 12.2921+/- 0.064
mean_var=83.1162+/-16.974, 0's: 0 Z-trim(104.9): 35 B-trim: 140 in 1/49
Lambda= 0.140680
statistics sampled from 8129 (8151) to 8129 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.25), width: 16
Scan time: 2.660
The best scores are: opt bits E(32554)
CCDS33240.1 SMYD1 gene_id:150572|Hs108|chr2 ( 490) 3359 691.9 4.2e-199
CCDS82480.1 SMYD1 gene_id:150572|Hs108|chr2 ( 477) 1716 358.4 9.7e-99
CCDS31022.1 SMYD2 gene_id:56950|Hs108|chr1 ( 433) 464 104.3 2.8e-22
CCDS53486.1 SMYD3 gene_id:64754|Hs108|chr1 ( 428) 453 102.1 1.3e-21
>>CCDS33240.1 SMYD1 gene_id:150572|Hs108|chr2 (490 aa)
initn: 3359 init1: 3359 opt: 3359 Z-score: 3688.1 bits: 691.9 E(32554): 4.2e-199
Smith-Waterman score: 3359; 100.0% identity (100.0% similar) in 490 aa overlap (1-490:1-490)
10 20 30 40 50 60
pF1KB5 MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 KISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 LSYLQAFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMICKAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LSYLQAFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMICKAY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 AILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQVMAEPSNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQVMAEPSNE
430 440 450 460 470 480
490
pF1KB5 PSPALFHKKQ
::::::::::
CCDS33 PSPALFHKKQ
490
>>CCDS82480.1 SMYD1 gene_id:150572|Hs108|chr2 (477 aa)
initn: 1716 init1: 1716 opt: 1716 Z-score: 1886.1 bits: 358.4 E(32554): 9.7e-99
Smith-Waterman score: 3231; 97.1% identity (97.3% similar) in 490 aa overlap (1-490:1-477)
10 20 30 40 50 60
pF1KB5 MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKVPNENIRLAARIMWRVEREGTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQYISHIFGVINCN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALG
::::::::::::::::::::::::::::::::::::::: .:::::::
CCDS82 GFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNG-------------KIELRALG
190 200 210 220
250 260 270 280 290 300
pF1KB5 KISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLGVKDNPKPSQE
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIVSEV
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 LSYLQAFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMICKAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LSYLQAFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMICKAY
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 AILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQVMAEPSNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQVMAEPSNE
410 420 430 440 450 460
490
pF1KB5 PSPALFHKKQ
::::::::::
CCDS82 PSPALFHKKQ
470
>>CCDS31022.1 SMYD2 gene_id:56950|Hs108|chr1 (433 aa)
initn: 665 init1: 254 opt: 464 Z-score: 513.5 bits: 104.3 E(32554): 2.8e-22
Smith-Waterman score: 808; 31.4% identity (63.8% similar) in 437 aa overlap (9-438:9-427)
10 20 30 40 50 60
pF1KB5 MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE
.: : . ::::::.: . : ..:..:. ::. :. . . :. :: :.:
CCDS31 MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKE
10 20 30 40 50 60
70 80 90 100 110
pF1KB5 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYGKV--PNENIRLAARIMWRVEREG
: .::.:: : ::. :::. : :: ::: . .:. :.:..::.:::. . . .
CCDS31 GLSKCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 TGLTEGCLVSVDDLQNHVEHFGEEEQKDL-RVDVDTFLQYWPPQSQQFSMQYISHIFGVI
:..: ....:.... ..:.::: . :. .. ... . . . . .:. .
CCDS31 ERTPSEKLLAVKEFESHLDKL-DNEKKDLIQSDIAALHHFYSKHLGFPDNDSLVVLFAQV
130 140 150 160 170
180 190 200 210 220 230
pF1KB5 NCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELR
::::::. :.. :. .: .:::...:.::.: :: : ... :.:
CCDS31 NCNGFTIEDEE-LSHLGSAIFPDVALMNHSCCPNVIVTYKG-------------TLAEVR
180 190 200 210 220
240 250 260 270 280 290
pF1KB5 ALGKISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKDDLFLGVKD-NPK
:. .:. :::. .::::.: .:.:. .:. .:.: : :..: : :: . .. .
CCDS31 AVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDP
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB5 PSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSI
:. :....:........:.. .:. :....:. ::. :: :.:.:::.:.
CCDS31 PKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQ
290 300 310 320 330 340
360 370 380 390 400 410
pF1KB5 VSEVLSYLQAFEEASFYARRMVDGYMK---LYHPNNAQLGMAVMRAGLTNWHAGNIEVGH
. : :.: .: : :..... : : :: : :.. . . : . : . .:.
CCDS31 AMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKA---AGE
350 360 370 380 390 400
420 430 440 450 460 470
pF1KB5 GMICKAYAILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQV
. :: ::. :.:: .:: ....
CCDS31 KALKKAIAIMEVAHGKDHPYISEIKQEIESH
410 420 430
>>CCDS53486.1 SMYD3 gene_id:64754|Hs108|chr1 (428 aa)
initn: 708 init1: 239 opt: 453 Z-score: 501.5 bits: 102.1 E(32554): 1.3e-21
Smith-Waterman score: 787; 31.0% identity (62.3% similar) in 448 aa overlap (9-449:6-426)
10 20 30 40 50 60
pF1KB5 MTIGRMENVEVFTAEGKGRGLKATKEFWAADIIFAERAYSAVVFDSLVNFVCHTCFKRQE
:: :.. .: ::.:. . ....: . .: . . :: :. .:
CCDS53 MEPLKVEKFATAKRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKE
10 20 30 40 50
70 80 90 100 110
pF1KB5 KLHRCGQCKFAHYCDRTCQKDAWLNHKNECSAIKR-YGKVPNENIRLAARIMWRVEREGT
:: ::.::. :.::. ::: :: .:: ::. .: . : ...:: .:..... .:.
CCDS53 KLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLM-DGA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 GLTEGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQY----ISHIFG
: : ::....... :.... :: : :: .. . :. :. . . :.
CCDS53 PSESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFA
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 VINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIE
. ::.::. . . .: ::::..:...:.::.: :::...:: : : .
CCDS53 KVICNSFTICNAE-MQEVGVGLYPSISLLNHSCDPNCSIVFN-GPH------------LL
180 190 200 210 220
240 250 260 270 280 290
pF1KB5 LRALGKISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKD-DLFLGVKDN
:::. : :::::. :.:.: .::::..::. :: :.: : .:: . :: :.. :
CCDS53 LRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTG----
230 240 250 260 270
300 310 320 330 340 350
pF1KB5 PKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRML
...: ::. ...:.::.. ... ...:. .:. . .. . : :::.:..:
CCDS53 ---DEQVWKEV----QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVL
280 290 300 310 320 330
360 370 380 390 400 410
pF1KB5 SIVSEVLSYLQAFEEASFYARRMVDGYMKLYHPNNAQL-GMAVMRAGLTNWHAGNIEVGH
. . .. : .::: ::. : .. : ... :.. . :. ::..: . : : . .
CCDS53 DCAMDACINLGLLEEALFYGTRTMEPY-RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAM
340 350 360 370 380 390
420 430 440 450 460 470
pF1KB5 GMICKAYAILLVTHGPSHPITKDLEAMRVQTEMELRMFRQNEFMYYKMREAALNNQPMQV
. :. :. :::: : . .:: . . . ..:
CCDS53 KNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIRAS
400 410 420
480 490
pF1KB5 MAEPSNEPSPALFHKKQ
490 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:30:50 2016 done: Sat Nov 5 16:30:50 2016
Total Scan time: 2.660 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]