FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5841, 403 aa
  1>>>pF1KB5841 403 - 403 aa - 403 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3544+/-0.000833; mu= 0.0277+/- 0.050
 mean_var=239.1632+/-48.263, 0's: 0 Z-trim(115.7): 11  B-trim: 164 in 1/53
 Lambda= 0.082933
 statistics sampled from 16258 (16264) to 16258 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.5), width:  16
 Scan time:  3.610

The best scores are:                                      opt bits E(32554)
CCDS45926.1 STAP2 gene_id:55620|Hs108|chr19        ( 403) 2763 343.0 2.9e-94
CCDS12128.1 STAP2 gene_id:55620|Hs108|chr19        ( 449) 2477 308.8 6.4e-84


>>CCDS45926.1 STAP2 gene_id:55620|Hs108|chr19             (403 aa)
 initn: 2763 init1: 2763 opt: 2763  Z-score: 1805.7  bits: 343.0 E(32554): 2.9e-94
Smith-Waterman score: 2763; 99.8% identity (100.0% similar) in 403 aa overlap (1-403:1-403)

               10        20        30        40        50        60
pF1KB5 MASALRPPRVPKPKGVLPSHYYESFLEKKGPCDRDYKKFWAGLQGLTIYFYNSNRDFQHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MASALRPPRVPKPKGVLPSHYYESFLEKKGPCDRDYKKFWAGLQGLTIYFYNSNRDFQHV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 EKLNLGAFEKLTDEIPWGSSRDPGTHFSLILRNQEIKFKVETLECREMWKGFILTVVELR
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS45 EKLNLGAFEKLTDEIPWGSSRDPGTHFSLILRDQEIKFKVETLECREMWKGFILTVVELR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VPTDLTLLPGHLYMMSEVLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VPTDLTLLPGHLYMMSEVLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCTSLDAVVNYFVSHTKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCTSLDAVVNYFVSHTKKA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LVPFLLDEDYEKVLGYVEADKENGENVWVAPSAPGPGPAPCTGGPKPLSPASSQDKLPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LVPFLLDEDYEKVLGYVEADKENGENVWVAPSAPGPGPAPCTGGPKPLSPASSQDKLPPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PPLPNQEENYVTPIGDGPAVDYENQDVASSSWPVILKPKKLPKPPAKLPKPPVGPKPEPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PPLPNQEENYVTPIGDGPAVDYENQDVASSSWPVILKPKKLPKPPAKLPKPPVGPKPEPK
              310       320       330       340       350       360

              370       380       390       400   
pF1KB5 VFNGGLGRKLPVSSAQPLFPTAGLADMTAELQKKLEKRRALEH
       :::::::::::::::::::::::::::::::::::::::::::
CCDS45 VFNGGLGRKLPVSSAQPLFPTAGLADMTAELQKKLEKRRALEH
              370       380       390       400   

>>CCDS12128.1 STAP2 gene_id:55620|Hs108|chr19             (449 aa)
 initn: 2546 init1: 2471 opt: 2477  Z-score: 1620.1  bits: 308.8 E(32554): 6.4e-84
Smith-Waterman score: 2574; 89.2% identity (89.4% similar) in 435 aa overlap (1-389:1-435)

               10        20        30        40        50        60
pF1KB5 MASALRPPRVPKPKGVLPSHYYESFLEKKGPCDRDYKKFWAGLQGLTIYFYNSNRDFQHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MASALRPPRVPKPKGVLPSHYYESFLEKKGPCDRDYKKFWAGLQGLTIYFYNSNRDFQHV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 EKLNLGAFEKLTDEIPWGSSRDPGTHFSLILRNQEIKFKVETLECREMWKGFILTVVELR
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS12 EKLNLGAFEKLTDEIPWGSSRDPGTHFSLILRDQEIKFKVETLECREMWKGFILTVVELR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VPTDLTLLPGHLYMMSEVLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VPTDLTLLPGHLYMMSEVLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCTSLDAVVNYFVSHTKKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GDGADGVSVTTRQMHNGTHVVRHYKVKREGPKYVIDVEQPFSCTSLDAVVNYFVSHTKKA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LVPFLLDEDYEKVLGYVEADKENGENVWVAPSAPGPGPAPCTGGPKPLSPASSQDKLPPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LVPFLLDEDYEKVLGYVEADKENGENVWVAPSAPGPGPAPCTGGPKPLSPASSQDKLPPL
              250       260       270       280       290       300

              310       320       330       340       350          
pF1KB5 PPLPNQEENYVTPIGDGPAVDYENQDVASSSWPVILKPKKLPKPPAKLPKPPVGPKP---
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS12 PPLPNQEENYVTPIGDGPAVDYENQDVASSSWPVILKPKKLPKPPAKLPKPPVGPKPVEK
              310       320       330       340       350       360

                                                  360       370    
pF1KB5 -------------------------------------------EPKVFNGGLGRKLPVSS
                                                  :::::::::::::::::
CCDS12 GFHHVAQAGLELLTSSDPPTSASQSAGITGVSHHTWPHLSSLPEPKVFNGGLGRKLPVSS
              370       380       390       400       410       420

          380       390       400   
pF1KB5 AQPLFPTAGLADMTAELQKKLEKRRALEH
       :::::::::::::::              
CCDS12 AQPLFPTAGLADMTAELQKKLEKRRALEH
              430       440         




403 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:08:57 2016 done: Sat Nov  5 15:08:58 2016
 Total Scan time:  3.610 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]