Result of FASTA (omim) for
pF1KB5840
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5840, 482 aa
1>>>pF1KB5840 482 - 482 aa - 482 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3365+/-0.000357; mu= 16.1760+/- 0.022
mean_var=155.0157+/-32.569, 0's: 0 Z-trim(119.1): 27 B-trim: 222 in 2/50
Lambda= 0.103012
statistics sampled from 32697 (32735) to 32697 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.384), width: 16
Scan time: 9.240
The best scores are: opt bits E(85289)
NP_038474 (OMIM: 607754) E3 ubiquitin-protein liga ( 482) 3331 506.9 5.2e-143
XP_011514300 (OMIM: 607754) PREDICTED: E3 ubiquiti ( 418) 2909 444.1 3.6e-124
XP_011514299 (OMIM: 607754) PREDICTED: E3 ubiquiti ( 418) 2909 444.1 3.6e-124
XP_011514298 (OMIM: 607754) PREDICTED: E3 ubiquiti ( 439) 2610 399.7 8.9e-111
NP_001138597 (OMIM: 607754) E3 ubiquitin-protein l ( 329) 2255 346.8 5.6e-95
NP_001278592 (OMIM: 607754) E3 ubiquitin-protein l ( 265) 1833 283.9 3.7e-76
NP_005655 (OMIM: 176270,603856,615346) probable E3 ( 507) 1440 225.8 2.1e-58
NP_001258636 (OMIM: 608426) probable E3 ubiquitin- ( 373) 1038 166.0 1.7e-40
NP_054879 (OMIM: 608426) probable E3 ubiquitin-pro ( 416) 1038 166.0 1.8e-40
>>NP_038474 (OMIM: 607754) E3 ubiquitin-protein ligase m (482 aa)
initn: 3331 init1: 3331 opt: 3331 Z-score: 2688.4 bits: 506.9 E(85289): 5.2e-143
Smith-Waterman score: 3331; 99.8% identity (100.0% similar) in 482 aa overlap (1-482:1-482)
10 20 30 40 50 60
pF1KB5 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LQLLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 ILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 ILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 YKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRAQRRNHFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 YKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRAQRRNHFW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 ELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDDELTDSEDEWDLFHDELEDFYDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_038 ELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDDELTDSEDEWDLFHDELEDFYDL
430 440 450 460 470 480
pF1KB5 DL
::
NP_038 DL
>>XP_011514300 (OMIM: 607754) PREDICTED: E3 ubiquitin-pr (418 aa)
initn: 2909 init1: 2909 opt: 2909 Z-score: 2350.2 bits: 444.1 E(85289): 3.6e-124
Smith-Waterman score: 2909; 99.8% identity (100.0% similar) in 418 aa overlap (65-482:1-418)
40 50 60 70 80 90
pF1KB5 TAPSLGAGGGGGGSDGSGGGWTKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQ
::::::::::::::::::::::::::::::
XP_011 MHGVCKEGDNCRYSHDLSDSPYSVVCKYFQ
10 20 30
100 110 120 130 140 150
pF1KB5 RGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 NFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLC
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 PYAAVGECRYGENCVYLHGDSCDMCGLQLLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQ
::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
XP_011 PYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQ
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 RSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPEC
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 RITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPD
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 GRREEPQRQKVGTSSRYRAQRRNHFWELIEERENSNPFDNDEEEVVTFELGEMLLMLLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRREEPQRQKVGTSSRYRAQRRNHFWELIEERENSNPFDNDEEEVVTFELGEMLLMLLAA
340 350 360 370 380 390
460 470 480
pF1KB5 GGDDELTDSEDEWDLFHDELEDFYDLDL
::::::::::::::::::::::::::::
XP_011 GGDDELTDSEDEWDLFHDELEDFYDLDL
400 410
>>XP_011514299 (OMIM: 607754) PREDICTED: E3 ubiquitin-pr (418 aa)
initn: 2909 init1: 2909 opt: 2909 Z-score: 2350.2 bits: 444.1 E(85289): 3.6e-124
Smith-Waterman score: 2909; 99.8% identity (100.0% similar) in 418 aa overlap (65-482:1-418)
40 50 60 70 80 90
pF1KB5 TAPSLGAGGGGGGSDGSGGGWTKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQ
::::::::::::::::::::::::::::::
XP_011 MHGVCKEGDNCRYSHDLSDSPYSVVCKYFQ
10 20 30
100 110 120 130 140 150
pF1KB5 RGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 NFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLC
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 PYAAVGECRYGENCVYLHGDSCDMCGLQLLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQ
::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
XP_011 PYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQ
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 RSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPEC
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB5 RITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPD
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB5 GRREEPQRQKVGTSSRYRAQRRNHFWELIEERENSNPFDNDEEEVVTFELGEMLLMLLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRREEPQRQKVGTSSRYRAQRRNHFWELIEERENSNPFDNDEEEVVTFELGEMLLMLLAA
340 350 360 370 380 390
460 470 480
pF1KB5 GGDDELTDSEDEWDLFHDELEDFYDLDL
::::::::::::::::::::::::::::
XP_011 GGDDELTDSEDEWDLFHDELEDFYDLDL
400 410
>>XP_011514298 (OMIM: 607754) PREDICTED: E3 ubiquitin-pr (439 aa)
initn: 2610 init1: 2610 opt: 2610 Z-score: 2109.8 bits: 399.7 E(85289): 8.9e-111
Smith-Waterman score: 2900; 90.9% identity (91.1% similar) in 482 aa overlap (1-482:1-439)
10 20 30 40 50 60
pF1KB5 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT
::: ::::::::::::::
XP_011 CRY-------------------------------------------EHSKPLKQEEATAT
70
130 140 150 160 170 180
pF1KB5 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG
80 90 100 110 120 130
190 200 210 220 230 240
pF1KB5 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB5 LQLLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB5 ILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILK
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB5 YKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRAQRRNHFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRAQRRNHFW
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB5 ELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDDELTDSEDEWDLFHDELEDFYDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDDELTDSEDEWDLFHDELEDFYDL
380 390 400 410 420 430
pF1KB5 DL
::
XP_011 DL
>>NP_001138597 (OMIM: 607754) E3 ubiquitin-protein ligas (329 aa)
initn: 2255 init1: 2255 opt: 2255 Z-score: 1826.1 bits: 346.8 E(85289): 5.6e-95
Smith-Waterman score: 2255; 99.7% identity (100.0% similar) in 329 aa overlap (1-329:1-329)
10 20 30 40 50 60
pF1KB5 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LQLLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 ILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILK
:::::::::::::::::::::::::::::
NP_001 ILSNCNHTYCLKCIRKWRSAKQFESKIIK
310 320
>>NP_001278592 (OMIM: 607754) E3 ubiquitin-protein ligas (265 aa)
initn: 1833 init1: 1833 opt: 1833 Z-score: 1488.3 bits: 283.9 E(85289): 3.7e-76
Smith-Waterman score: 1833; 99.6% identity (100.0% similar) in 265 aa overlap (65-329:1-265)
40 50 60 70 80 90
pF1KB5 TAPSLGAGGGGGGSDGSGGGWTKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQ
::::::::::::::::::::::::::::::
NP_001 MHGVCKEGDNCRYSHDLSDSPYSVVCKYFQ
10 20 30
100 110 120 130 140 150
pF1KB5 RGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNS
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB5 NFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLC
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB5 PYAAVGECRYGENCVYLHGDSCDMCGLQLLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQ
::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
NP_001 PYAAVGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQ
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB5 RSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPEC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIK
220 230 240 250 260
340 350 360 370 380 390
pF1KB5 RITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPD
>>NP_005655 (OMIM: 176270,603856,615346) probable E3 ubi (507 aa)
initn: 1419 init1: 1125 opt: 1440 Z-score: 1169.4 bits: 225.8 E(85289): 2.1e-58
Smith-Waterman score: 1618; 51.5% identity (70.9% similar) in 505 aa overlap (2-482:20-507)
10 20 30
pF1KB5 MAEAATPGTTATT------SGAGAAAATA---AAASPTPIPT
:::: :... :: .:: .: :: . .:.:.
NP_005 MEEPAAPSEAHEAAGAQAGAEAAREGVSGPDLPVCEPSGESAAPDSALPHAARGWAPFPV
10 20 30 40 50 60
40 50 60 70 80
pF1KB5 VTAPS-LGAGG------GGGGS------DGSGGGWTKQVTCRYFMHGVCKEGDNCRYSHD
. .:. : :: .:::. . :.: ::::. :::..:: ::::.:::::::
NP_005 APVPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSHD
70 80 90 100 110 120
90 100 110 120 130
pF1KB5 LSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLS-SIVG
:: ... : : : .: :: : : :.:::: ..:
NP_005 LSGRKMATEGGVSPPGASAGGGPSTAAHIEPPTQEVAEAPP--------AASSLSLPVIG
130 140 150 160 170
140 150 160 170 180 190
pF1KB5 PLVEMNTGEAESRNSNF-ATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKE
.: . ::: :.. :. ::: :.:..:::::::::: :: . : :::::.:
NP_005 SAAERGFFEAERDNADRGAAGGAGVESWADAIEFVPGQPYRGRWVASAPEAPLQSS----
180 190 200 210 220
200 210 220 230 240 250
pF1KB5 ESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQLLHPMDAAQRSQHIKS
:.:..: :: . ..: ::. : : ::.:.::::: ::::::: ::::::::: .:...
NP_005 ETERKQMAVGSGLRFCYYASRGVCFRGESCMYLHGDICDMCGLQTLHPMDAAQREEHMRA
230 240 250 260 270 280
260 270 280 290 300 310
pF1KB5 CIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWR
:::::::::::::::::. : :::::::::::::::..:::::::::::..:..:::.::
NP_005 CIEAHEKDMELSFAVQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWR
290 300 310 320 330 340
320 330 340 350 360 370
pF1KB5 SAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRG
::.:::..:.::::.::.::..:::::.::::.::::::: .::::::::::::: ::::
NP_005 SARQFENRIVKSCPQCRVTSELVIPSEFWVEEEEEKQKLIQQYKEAMSNKACRYFAEGRG
350 360 370 380 390 400
380 390 400 410 420 430
pF1KB5 SCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRAQRRNHFWELIEERENSNPFDNDEEE
.:::: .::::: ::.: .:: :. : : : . : .. :.. . . ..:
NP_005 NCPFGDTCFYKHEYPEGWGDEPPGPGGGSFSAYWHQ----LVEPVRMGEGNMLYKSIKKE
410 420 430 440 450 460
440 450 460 470 480
pF1KB5 VVTFELGEMLLMLLAAGGDDELTDSEDEWDLFHDELEDFYDLDL
.:...:. .:. . . ::: :::.:::.: :::....: :
NP_005 LVVLRLASLLFKRFLSL-RDELPFSEDQWDLLHYELEEYFNLIL
470 480 490 500
>>NP_001258636 (OMIM: 608426) probable E3 ubiquitin-prot (373 aa)
initn: 1016 init1: 975 opt: 1038 Z-score: 848.0 bits: 166.0 E(85289): 1.7e-40
Smith-Waterman score: 1060; 44.2% identity (71.1% similar) in 360 aa overlap (104-451:8-365)
80 90 100 110 120 130
pF1KB5 NCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEE-ATATELTTKSSLAASS
:::.:..: :..: . : : :
NP_001 MSTKQITCRYDHTRPSAAAGGAVGTMAHSVPSPAFHS
10 20 30
140 150 160 170 180
pF1KB5 SL--SSIVGPLVEMNTGEAESRNSNFATVG----AGSEDWVNAIEFVPGQPYCGRTAPSC
: ... .:. :. : .:.. .. .: . . .: . :. ::
NP_001 PHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKTQPSMVSNPGSCSDPQPSP
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB5 TEAP---LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQL
: :.. . .. . ... ...:::::::.::::.:. ::::::. :..: ::.
NP_001 EMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFGDACVYLHGEVCEICRLQV
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB5 LHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILS
:::.: ::. : : :. . :..:: .:: : :.: ::.:::::. :::. :::::::::
NP_001 LHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILS
160 170 180 190 200 210
310 320 330 340 350 360
pF1KB5 NCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILKYKE
::::::::.:::.:: :::::. :::::::::. :.::::: ::::....:..:: .:.
NP_001 NCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQ
220 230 240 250 260 270
370 380 390 400 410 420
pF1KB5 AMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRAQRRN--HFWE
.:..:::.::..:.:.::::..:.:.::::::: ::.. . ::. .. : ..:.
NP_001 GMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKPRKQLSSQGTVRFFNSVRLWD
280 290 300 310 320 330
430 440 450 460 470 480
pF1KB5 LIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDDELTDSEDEWDLFHDELEDFYDLD
.::.::. . .: :.: :::.... :
NP_001 FIENRESRHVPNN--EDVDMTELGDLFMHLSGVESSEP
340 350 360 370
>>NP_054879 (OMIM: 608426) probable E3 ubiquitin-protein (416 aa)
initn: 1285 init1: 975 opt: 1038 Z-score: 847.5 bits: 166.0 E(85289): 1.8e-40
Smith-Waterman score: 1329; 46.8% identity (73.3% similar) in 408 aa overlap (56-451:3-408)
30 40 50 60 70 80
pF1KB5 ASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVTCRYFMHGVCKEGDNCRYSHDLSDSP
:::.::::::::::.::..: .::::..:
NP_054 MSTKQITCRYFMHGVCREGSQCLFSHDLANSK
10 20 30
90 100 110 120 130 140
pF1KB5 YSVVCKYFQRGYCIYGDRCRYEHSKPLKQEE-ATATELTTKSSLAASSSL--SSIVGPLV
:..:::.:.::: :: ::::.:..: :..: . : : : : ... .:
NP_054 PSTICKYYQKGYCAYGTRCRYDHTRPSAAAGGAVGTMAHSVPSPAFHSPHPPSEVTASIV
40 50 60 70 80 90
150 160 170 180 190
pF1KB5 EMNTGEAESRNSNFATVG----AGSEDWVNAIEFVPGQPYCGRTAPSCTEAP---LQGSV
. :. : .:.. .. .: . . .: . :. :: : :..
NP_054 KTNSHEPGKREKRTLVLRDRNLSGMAERKTQPSMVSNPGSCSDPQPSPEMKPHSYLDAIR
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB5 TKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCGLQLLHPMDAAQRSQH
. .. . ... ...:::::::.::::.:. ::::::. :..: ::.:::.: ::. :
NP_054 SGLDDVEASSSYSNEQQLCPYAAAGECRFGDACVYLHGEVCEICRLQVLHPFDPEQRKAH
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB5 IKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIR
: :. . :..:: .:: : :.: ::.:::::. :::. :::::::::::::::::.:::
NP_054 EKICMLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILSNCNHTYCLSCIR
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB5 KWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDE
.:: :::::. :::::::::. :.::::: ::::....:..:: .:..:..:::.::..
NP_054 QWRCAKQFENPIIKSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMGKKACKYFEQ
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB5 GRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRAQRRN--HFWELIEERENSNPFD
:.:.::::..:.:.::::::: ::.. . ::. .. : ..:..::.::. . .
NP_054 GKGTCPFGSKCLYRHAYPDGRLAEPEKPRKQLSSQGTVRFFNSVRLWDFIENRESRHVPN
340 350 360 370 380 390
440 450 460 470 480
pF1KB5 NDEEEVVTFELGEMLLMLLAAGGDDELTDSEDEWDLFHDELEDFYDLDL
: :.: :::.... :
NP_054 N--EDVDMTELGDLFMHLSGVESSEP
400 410
482 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 15:08:20 2016 done: Sat Nov 5 15:08:22 2016
Total Scan time: 9.240 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]