FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5833, 175 aa
  1>>>pF1KB5833 175 - 175 aa - 175 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4740+/-0.000634; mu= 11.3592+/- 0.039
 mean_var=135.3225+/-27.062, 0's: 0 Z-trim(116.8): 2  B-trim: 780 in 1/53
 Lambda= 0.110253
 statistics sampled from 17452 (17454) to 17452 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.536), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS10104.1 HYPK gene_id:25764|Hs108|chr15         ( 129)  800 136.6 5.4e-33


>>CCDS10104.1 HYPK gene_id:25764|Hs108|chr15              (129 aa)
 initn: 800 init1: 800 opt: 800  Z-score: 705.8  bits: 136.6 E(32554): 5.4e-33
Smith-Waterman score: 800; 100.0% identity (100.0% similar) in 129 aa overlap (47-175:1-129)

         20        30        40        50        60        70      
pF1KB5 AERRCGPGPAPPPPRAEAVSVAGSRREVGLMRRRGEIDMATEGDVELELETETSGPERPP
                                     ::::::::::::::::::::::::::::::
CCDS10                               MRRRGEIDMATEGDVELELETETSGPERPP
                                             10        20        30

         80        90       100       110       120       130      
pF1KB5 EKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSVIGDRRSREQKAKQEREKELAKVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSVIGDRRSREQKAKQEREKELAKVTI
               40        50        60        70        80        90

        140       150       160       170     
pF1KB5 KKEDLELIMTEMEISRAAAERSLREHMGNVVEALIALTN
       :::::::::::::::::::::::::::::::::::::::
CCDS10 KKEDLELIMTEMEISRAAAERSLREHMGNVVEALIALTN
              100       110       120         




175 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:05:50 2016 done: Sat Nov  5 15:05:50 2016
 Total Scan time:  2.290 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]