FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5825, 125 aa
  1>>>pF1KB5825 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2375+/-0.000747; mu= 10.9621+/- 0.045
 mean_var=81.9338+/-18.838, 0's: 0 Z-trim(108.5): 96  B-trim: 549 in 1/49
 Lambda= 0.141691
 statistics sampled from 10094 (10221) to 10094 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.314), width:  16
 Scan time:  1.560

The best scores are:                                      opt bits E(32554)
CCDS1707.1 SF3B6 gene_id:51639|Hs108|chr2          ( 125)  833 179.3 5.4e-46


>>CCDS1707.1 SF3B6 gene_id:51639|Hs108|chr2               (125 aa)
 initn: 833 init1: 833 opt: 833  Z-score: 939.3  bits: 179.3 E(32554): 5.4e-46
Smith-Waterman score: 833; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KB5 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 YVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGIN
               70        80        90       100       110       120

            
pF1KB5 TDPPK
       :::::
CCDS17 TDPPK
            




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:01:45 2016 done: Sat Nov  5 15:01:45 2016
 Total Scan time:  1.560 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]