FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5823, 148 aa
  1>>>pF1KB5823 148 - 148 aa - 148 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3217+/-0.000325; mu= 11.0452+/- 0.020
 mean_var=59.3877+/-11.613, 0's: 0 Z-trim(115.6): 6  B-trim: 0 in 0/51
 Lambda= 0.166428
 statistics sampled from 26097 (26101) to 26097 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.306), width:  16
 Scan time:  4.570

The best scores are:                                      opt bits E(85289)
NP_002361 (OMIM: 602603) protein mago nashi homolo ( 146)  968 240.3 8.2e-64


>>NP_002361 (OMIM: 602603) protein mago nashi homolog [H  (146 aa)
 initn: 968 init1: 968 opt: 968  Z-score: 1266.6  bits: 240.3 E(85289): 8.2e-64
Smith-Waterman score: 968; 100.0% identity (100.0% similar) in 144 aa overlap (5-148:3-146)

               10        20        30        40        50        60
pF1KB5 MAVASDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVME
           ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002   MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVME
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB5 ELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEG
       60        70        80        90       100       110        

              130       140        
pF1KB5 LRVFYYLVQDLKCLVFSLIGLHFKIKPI
       ::::::::::::::::::::::::::::
NP_002 LRVFYYLVQDLKCLVFSLIGLHFKIKPI
      120       130       140      




148 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:36:39 2016 done: Sat Nov  5 01:36:40 2016
 Total Scan time:  4.570 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]