FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5708, 718 aa
  1>>>pF1KB5708     718 - 718 aa - 718 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8342+/-0.00102; mu= 4.6927+/- 0.062
 mean_var=212.7159+/-43.081, 0's: 0 Z-trim(111.7): 93  B-trim: 80 in 1/51
 Lambda= 0.087938
 statistics sampled from 12488 (12579) to 12488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.386), width:  16
 Scan time:  4.370

The best scores are:                                      opt bits E(32554)
CCDS2946.1 NFKBIZ gene_id:64332|Hs108|chr3         ( 718) 4825 625.3 9.5e-179
CCDS43123.1 NFKBIZ gene_id:64332|Hs108|chr3        ( 618) 4143 538.8 9.4e-153


>>CCDS2946.1 NFKBIZ gene_id:64332|Hs108|chr3              (718 aa)
 initn: 4825 init1: 4825 opt: 4825  Z-score: 3322.6  bits: 625.3 E(32554): 9.5e-179
Smith-Waterman score: 4825; 100.0% identity (100.0% similar) in 718 aa overlap (1-718:1-718)

               10        20        30        40        50        60
pF1KB5 MIVDKLLDDSRGGEGLRDAAGGCGLMTSPLNLSYFYGASPPAAAPGACDASCSVLGPSAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MIVDKLLDDSRGGEGLRDAAGGCGLMTSPLNLSYFYGASPPAAAPGACDASCSVLGPSAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 GSPGSDSSDFSSASSVSSCGAVESRSRGGARAERQPVEPHMGVGRQQRGPFQGVRVKNSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 GSPGSDSSDFSSASSVSSCGAVESRSRGGARAERQPVEPHMGVGRQQRGPFQGVRVKNSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KELLLHIRSHKQKASGQAVDDFKTQGVNIEQFRELKNTVSYSGKRKGPDSLSDGPACKRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 KELLLHIRSHKQKASGQAVDDFKTQGVNIEQFRELKNTVSYSGKRKGPDSLSDGPACKRP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 ALLHSQFLTPPQTPTPGESMEDVHLNEPKQESSADLLQNIINIKNECSPVSLNTVQVSWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ALLHSQFLTPPQTPTPGESMEDVHLNEPKQESSADLLQNIINIKNECSPVSLNTVQVSWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 NPVVVPQSSPAEQCQDFHGGQVFSPPQKCQPFQVRGSQQMIDQASLYQYSPQNQHVEQQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 NPVVVPQSSPAEQCQDFHGGQVFSPPQKCQPFQVRGSQQMIDQASLYQYSPQNQHVEQQP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 HYTHKPTLEYSPFPIPPQSPAYEPNLFDGPESQFCPNQSLVSLLGDQRESENIANPMQTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 HYTHKPTLEYSPFPIPPQSPAYEPNLFDGPESQFCPNQSLVSLLGDQRESENIANPMQTS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 SSVQQQNDAHLHSFSMMPSSACEAMVGHEMASDSSNTSLPFSNMGNPMNTTQLGKSLFQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 SSVQQQNDAHLHSFSMMPSSACEAMVGHEMASDSSNTSLPFSNMGNPMNTTQLGKSLFQW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 QVEQEESKLANISQDQFLSKDADGDTFLHIAVAQGRRALSYVLARKMNALHMLDIKEHNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 QVEQEESKLANISQDQFLSKDADGDTFLHIAVAQGRRALSYVLARKMNALHMLDIKEHNG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 QSAFQVAVAANQHLIVQDLVNIGAQVNTTDCWGRTPLHVCAEKGHSQVLQAIQKGAVGSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 QSAFQVAVAANQHLIVQDLVNIGAQVNTTDCWGRTPLHVCAEKGHSQVLQAIQKGAVGSN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 QFVDLEATNYDGLTPLHCAVIAHNAVVHELQRNQQPHSPEVQELLLKNKSLVDTIKCLIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 QFVDLEATNYDGLTPLHCAVIAHNAVVHELQRNQQPHSPEVQELLLKNKSLVDTIKCLIQ
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 MGAAVEAKDRKSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNGNTALHVAASLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MGAAVEAKDRKSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNGNTALHVAASLQ
              610       620       630       640       650       660

              670       680       690       700       710        
pF1KB5 YRLTQLDAVRLLMRKGADPSTRNLENEQPVHLVPDGPVGEQIRRILKGKSIQQRAPPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 YRLTQLDAVRLLMRKGADPSTRNLENEQPVHLVPDGPVGEQIRRILKGKSIQQRAPPY
              670       680       690       700       710        

>>CCDS43123.1 NFKBIZ gene_id:64332|Hs108|chr3             (618 aa)
 initn: 4143 init1: 4143 opt: 4143  Z-score: 2855.9  bits: 538.8 E(32554): 9.4e-153
Smith-Waterman score: 4143; 100.0% identity (100.0% similar) in 618 aa overlap (101-718:1-618)

               80        90       100       110       120       130
pF1KB5 SSASSVSSCGAVESRSRGGARAERQPVEPHMGVGRQQRGPFQGVRVKNSVKELLLHIRSH
                                     ::::::::::::::::::::::::::::::
CCDS43                               MGVGRQQRGPFQGVRVKNSVKELLLHIRSH
                                             10        20        30

              140       150       160       170       180       190
pF1KB5 KQKASGQAVDDFKTQGVNIEQFRELKNTVSYSGKRKGPDSLSDGPACKRPALLHSQFLTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQKASGQAVDDFKTQGVNIEQFRELKNTVSYSGKRKGPDSLSDGPACKRPALLHSQFLTP
               40        50        60        70        80        90

              200       210       220       230       240       250
pF1KB5 PQTPTPGESMEDVHLNEPKQESSADLLQNIINIKNECSPVSLNTVQVSWLNPVVVPQSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PQTPTPGESMEDVHLNEPKQESSADLLQNIINIKNECSPVSLNTVQVSWLNPVVVPQSSP
              100       110       120       130       140       150

              260       270       280       290       300       310
pF1KB5 AEQCQDFHGGQVFSPPQKCQPFQVRGSQQMIDQASLYQYSPQNQHVEQQPHYTHKPTLEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AEQCQDFHGGQVFSPPQKCQPFQVRGSQQMIDQASLYQYSPQNQHVEQQPHYTHKPTLEY
              160       170       180       190       200       210

              320       330       340       350       360       370
pF1KB5 SPFPIPPQSPAYEPNLFDGPESQFCPNQSLVSLLGDQRESENIANPMQTSSSVQQQNDAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SPFPIPPQSPAYEPNLFDGPESQFCPNQSLVSLLGDQRESENIANPMQTSSSVQQQNDAH
              220       230       240       250       260       270

              380       390       400       410       420       430
pF1KB5 LHSFSMMPSSACEAMVGHEMASDSSNTSLPFSNMGNPMNTTQLGKSLFQWQVEQEESKLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LHSFSMMPSSACEAMVGHEMASDSSNTSLPFSNMGNPMNTTQLGKSLFQWQVEQEESKLA
              280       290       300       310       320       330

              440       450       460       470       480       490
pF1KB5 NISQDQFLSKDADGDTFLHIAVAQGRRALSYVLARKMNALHMLDIKEHNGQSAFQVAVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NISQDQFLSKDADGDTFLHIAVAQGRRALSYVLARKMNALHMLDIKEHNGQSAFQVAVAA
              340       350       360       370       380       390

              500       510       520       530       540       550
pF1KB5 NQHLIVQDLVNIGAQVNTTDCWGRTPLHVCAEKGHSQVLQAIQKGAVGSNQFVDLEATNY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NQHLIVQDLVNIGAQVNTTDCWGRTPLHVCAEKGHSQVLQAIQKGAVGSNQFVDLEATNY
              400       410       420       430       440       450

              560       570       580       590       600       610
pF1KB5 DGLTPLHCAVIAHNAVVHELQRNQQPHSPEVQELLLKNKSLVDTIKCLIQMGAAVEAKDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DGLTPLHCAVIAHNAVVHELQRNQQPHSPEVQELLLKNKSLVDTIKCLIQMGAAVEAKDR
              460       470       480       490       500       510

              620       630       640       650       660       670
pF1KB5 KSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNGNTALHVAASLQYRLTQLDAVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNGNTALHVAASLQYRLTQLDAVR
              520       530       540       550       560       570

              680       690       700       710        
pF1KB5 LLMRKGADPSTRNLENEQPVHLVPDGPVGEQIRRILKGKSIQQRAPPY
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LLMRKGADPSTRNLENEQPVHLVPDGPVGEQIRRILKGKSIQQRAPPY
              580       590       600       610        




718 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Apr  6 11:39:19 2017 done: Thu Apr  6 11:39:20 2017
 Total Scan time:  4.370 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]