Result of FASTA (omim) for
pF1KB5632
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5632, 269 aa
1>>>pF1KB5632 269 - 269 aa - 269 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5931+/-0.000347; mu= 14.2518+/- 0.022
mean_var=92.7801+/-18.421, 0's: 0 Z-trim(116.1): 77 B-trim: 0 in 0/56
Lambda= 0.133152
statistics sampled from 26880 (26968) to 26880 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.316), width: 16
Scan time: 7.150
The best scores are: opt bits E(85289)
NP_003944 (OMIM: 604376) myelin protein zero-like ( 269) 1776 351.1 1.3e-96
NP_078845 (OMIM: 604376) myelin protein zero-like ( 209) 1333 265.9 4.5e-71
NP_001139663 (OMIM: 604376) myelin protein zero-li ( 119) 547 114.7 8.3e-26
XP_016856810 (OMIM: 118200,145900,159440,180800,60 ( 240) 427 91.9 1.2e-18
NP_000521 (OMIM: 118200,145900,159440,180800,60525 ( 248) 426 91.7 1.4e-18
NP_001302420 (OMIM: 118200,145900,159440,180800,60 ( 312) 426 91.8 1.7e-18
NP_005788 (OMIM: 604873) myelin protein zero-like ( 215) 349 76.8 3.6e-14
NP_658911 (OMIM: 604873) myelin protein zero-like ( 215) 349 76.8 3.6e-14
XP_006718838 (OMIM: 611707) PREDICTED: myelin prot ( 217) 307 68.8 9.8e-12
XP_016872793 (OMIM: 611707) PREDICTED: myelin prot ( 219) 307 68.8 9.9e-12
NP_938016 (OMIM: 611707) myelin protein zero-like ( 235) 307 68.8 1e-11
NP_001273081 (OMIM: 611707) myelin protein zero-li ( 223) 300 67.4 2.5e-11
NP_004579 (OMIM: 601327,615378) sodium channel sub ( 215) 251 58.0 1.7e-08
NP_872413 (OMIM: 300620) V-set and immunoglobulin ( 387) 232 54.6 3.3e-07
NP_001193992 (OMIM: 602621) coxsackievirus and ade ( 252) 211 50.4 3.9e-06
XP_011527781 (OMIM: 602621) PREDICTED: coxsackievi ( 252) 211 50.4 3.9e-06
XP_011527780 (OMIM: 602621) PREDICTED: coxsackievi ( 258) 211 50.4 4e-06
XP_011527779 (OMIM: 602621) PREDICTED: coxsackievi ( 278) 211 50.4 4.2e-06
NP_001193993 (OMIM: 602621) coxsackievirus and ade ( 200) 209 49.9 4.3e-06
XP_011527778 (OMIM: 602621) PREDICTED: coxsackievi ( 348) 211 50.5 5e-06
NP_001193995 (OMIM: 602621) coxsackievirus and ade ( 352) 211 50.5 5e-06
NP_001329 (OMIM: 602621) coxsackievirus and adenov ( 365) 211 50.5 5.1e-06
NP_777594 (OMIM: 608256,611819) sodium channel sub ( 228) 201 48.4 1.4e-05
NP_001015887 (OMIM: 608351) immunoglobulin superfa ( 431) 196 47.7 4.3e-05
XP_011510774 (OMIM: 608351) PREDICTED: immunoglobu ( 406) 187 46.0 0.00014
NP_689751 (OMIM: 608351) immunoglobulin superfamil ( 430) 187 46.0 0.00014
XP_011510771 (OMIM: 608351) PREDICTED: immunoglobu ( 430) 187 46.0 0.00014
XP_011510772 (OMIM: 608351) PREDICTED: immunoglobu ( 430) 187 46.0 0.00014
XP_011510776 (OMIM: 608351) PREDICTED: immunoglobu ( 323) 182 44.9 0.00022
XP_011510773 (OMIM: 608351) PREDICTED: immunoglobu ( 429) 182 45.0 0.00028
XP_011510770 (OMIM: 608351) PREDICTED: immunoglobu ( 443) 182 45.0 0.00028
XP_011510769 (OMIM: 608351) PREDICTED: immunoglobu ( 453) 182 45.0 0.00029
XP_011510768 (OMIM: 608351) PREDICTED: immunoglobu ( 457) 182 45.0 0.00029
XP_011510765 (OMIM: 608351) PREDICTED: immunoglobu ( 480) 182 45.1 0.0003
XP_011510767 (OMIM: 608351) PREDICTED: immunoglobu ( 480) 182 45.1 0.0003
XP_011510766 (OMIM: 608351) PREDICTED: immunoglobu ( 480) 182 45.1 0.0003
XP_011510764 (OMIM: 608351) PREDICTED: immunoglobu ( 481) 182 45.1 0.0003
NP_694938 (OMIM: 609770) junctional adhesion molec ( 384) 180 44.6 0.00033
XP_011541199 (OMIM: 608214,613120) PREDICTED: sodi ( 215) 176 43.6 0.00037
NP_001035241 (OMIM: 608214,613120) sodium channel ( 215) 176 43.6 0.00037
NP_060870 (OMIM: 608214,613120) sodium channel sub ( 215) 176 43.6 0.00037
NP_001091996 (OMIM: 609770) junctional adhesion mo ( 394) 179 44.4 0.00039
XP_016872702 (OMIM: 609770) PREDICTED: junctional ( 416) 179 44.4 0.0004
XP_005271464 (OMIM: 609770) PREDICTED: junctional ( 384) 177 44.0 0.00049
NP_005805 (OMIM: 602171) cell surface A33 antigen ( 319) 167 42.0 0.0016
NP_001164024 (OMIM: 300620) V-set and immunoglobul ( 423) 168 42.3 0.0018
XP_011529238 (OMIM: 300620) PREDICTED: V-set and i ( 442) 165 41.8 0.0027
XP_005262184 (OMIM: 300620) PREDICTED: V-set and i ( 449) 165 41.8 0.0027
NP_001316849 (OMIM: 606011) V-set and immunoglobul ( 284) 154 39.5 0.0084
XP_006723608 (OMIM: 602461) PREDICTED: tyrosine-pr ( 291) 154 39.5 0.0086
>>NP_003944 (OMIM: 604376) myelin protein zero-like prot (269 aa)
initn: 1776 init1: 1776 opt: 1776 Z-score: 1855.5 bits: 351.1 E(85289): 1.3e-96
Smith-Waterman score: 1776; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KB5 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 KSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKENLPVFPVWVVVGIVTAVVLGLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKENLPVFPVWVVVGIVTAVVLGLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 LLISMILAVLYRRKNSKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLPSGSHQGPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLISMILAVLYRRKNSKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLPSGSHQGPVI
190 200 210 220 230 240
250 260
pF1KB5 YAQLDHSGGHHSDKINKSESVVYADIRKN
:::::::::::::::::::::::::::::
NP_003 YAQLDHSGGHHSDKINKSESVVYADIRKN
250 260
>>NP_078845 (OMIM: 604376) myelin protein zero-like prot (209 aa)
initn: 1349 init1: 1333 opt: 1333 Z-score: 1397.1 bits: 265.9 E(85289): 4.5e-71
Smith-Waterman score: 1333; 98.5% identity (99.5% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KB5 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 KSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 KSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKENLPVFPVWVVVGIVTAVVLGLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 NIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKENLPVFPVWVVVGIVTAVVLGLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 LLISMILAVLYRRKNSKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLPSGSHQGPVI
:::::::::::::::::::::: ..
NP_078 LLISMILAVLYRRKNSKRDYTGAQSYMHS
190 200
>>NP_001139663 (OMIM: 604376) myelin protein zero-like p (119 aa)
initn: 754 init1: 547 opt: 547 Z-score: 584.3 bits: 114.7 E(85289): 8.3e-26
Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86)
10 20 30 40 50 60
pF1KB5 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAASAGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 KSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASI
::::::::::::::::::::::::::
NP_001 KSTSTTGGLTSVSWSFQPEGADTTVSGPVIYAQLDHSGGHHSDKINKSESVVYADIRKN
70 80 90 100 110
>--
initn: 221 init1: 221 opt: 221 Z-score: 245.9 bits: 52.0 E(85289): 5.9e-07
Smith-Waterman score: 221; 100.0% identity (100.0% similar) in 33 aa overlap (237-269:87-119)
210 220 230 240 250 260
pF1KB5 ESLSPVKQAPRKSPSDTEGLVKSLPSGSHQGPVIYAQLDHSGGHHSDKINKSESVVYADI
::::::::::::::::::::::::::::::
NP_001 TCKFKSTSTTGGLTSVSWSFQPEGADTTVSGPVIYAQLDHSGGHHSDKINKSESVVYADI
60 70 80 90 100 110
pF1KB5 RKN
:::
NP_001 RKN
>>XP_016856810 (OMIM: 118200,145900,159440,180800,605253 (240 aa)
initn: 445 init1: 382 opt: 427 Z-score: 455.7 bits: 91.9 E(85289): 1.2e-18
Smith-Waterman score: 427; 36.7% identity (64.6% similar) in 226 aa overlap (1-218:2-222)
10 20 30 40 50
pF1KB5 MAASAGAGAVI-AAPDSRRWLWSVLAAAL--GLLTAGVSALEVYTPKEIFVANGTQGKL
. : : : :. .::.: .::. : .:. . ..:. ::: .:. : :.. :
XP_016 MLRAPAPAPAMAPGAPSSSP--SPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTL
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 TCKFKSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKK
:.: :. .. : .: .::::. ..:.:::..:: :. . ::.::.:.:: :
XP_016 HCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 DASINIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKENLPVFPVWVVVGIVTAVV
:.:: :.:... :::. :::::::::: . ... ::: :: .:. ::.: : . :
XP_016 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK--VPTR-YGVVLGAVIGGV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 LGLTLLISMILAV-----LYRRKNSKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLP
::..::. ... : : :. .: .. .. .: :.: ..
XP_016 LGVVLLLLLLFYVVRYCWLRRQAALQRRLSAMEKGKLHKPGKDASKRGRQGFYNNQMRSC
180 190 200 210 220 230
240 250 260
pF1KB5 SGSHQGPVIYAQLDHSGGHHSDKINKSESVVYADIRKN
XP_016 VWKTL
240
>>NP_000521 (OMIM: 118200,145900,159440,180800,605253,60 (248 aa)
initn: 494 init1: 382 opt: 426 Z-score: 454.4 bits: 91.7 E(85289): 1.4e-18
Smith-Waterman score: 455; 37.4% identity (67.4% similar) in 227 aa overlap (23-247:13-226)
10 20 30 40 50
pF1KB5 MAASAGAGAVIAAPDSRRWLWSVLAAAL--GLLTAGVSALEVYTPKEIFVANGTQGKLTC
.::. : .:. . ..:. ::: .:. : :.. : :
NP_000 MAPGAPSSSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHC
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 KFKSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDA
.: :. .. : .: .::::. ..:.:::..:: :. . ::.::.:.:: ::.
NP_000 SFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 SINIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKENLPVFPVWVVVGIVTAVVLG
:: :.:... :::. :::::::::: . ... ::: :: .:. ::.: : . :::
NP_000 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK--VPTR-YGVVLGAVIGGVLG
120 130 140 150 160
180 190 200 210 220 230
pF1KB5 LTLLISMILAVLYRRKNSKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLPSGSHQGP
..::. ... :. : .:. . .. :: .... ..:. :. . ..: :
NP_000 VVLLLLLLFYVV-RYCWLRRQ---AALQRRLSAMEKGKLHKPG------KDASKRGRQTP
170 180 190 200 210
240 250 260
pF1KB5 VIYAQLDHSGGHHSDKINKSESVVYADIRKN
:.::.::::
NP_000 VLYAMLDHSRSTKAVSEKKAKGLGESRKDKK
220 230 240
>>NP_001302420 (OMIM: 118200,145900,159440,180800,605253 (312 aa)
initn: 494 init1: 382 opt: 426 Z-score: 453.1 bits: 91.8 E(85289): 1.7e-18
Smith-Waterman score: 455; 37.4% identity (67.4% similar) in 227 aa overlap (23-247:13-226)
10 20 30 40 50
pF1KB5 MAASAGAGAVIAAPDSRRWLWSVLAAAL--GLLTAGVSALEVYTPKEIFVANGTQGKLTC
.::. : .:. . ..:. ::: .:. : :.. : :
NP_001 MAPGAPSSSPSPILAVLLFSSLVLSPAQAIVVYTDREVHGAVGSRVTLHC
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 KFKSTSTTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDA
.: :. .. : .: .::::. ..:.:::..:: :. . ::.::.:.:: ::.
NP_001 SFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 SINIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKENLPVFPVWVVVGIVTAVVLG
:: :.:... :::. :::::::::: . ... ::: :: .:. ::.: : . :::
NP_001 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK--VPTR-YGVVLGAVIGGVLG
120 130 140 150 160
180 190 200 210 220 230
pF1KB5 LTLLISMILAVLYRRKNSKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLPSGSHQGP
..::. ... :. : .:. . .. :: .... ..:. :. . ..: :
NP_001 VVLLLLLLFYVV-RYCWLRRQ---AALQRRLSAMEKGKLHKPG------KDASKRGRQTP
170 180 190 200 210
240 250 260
pF1KB5 VIYAQLDHSGGHHSDKINKSESVVYADIRKN
:.::.::::
NP_001 VLYAMLDHSRSTKAVSEKKAKGLGESRKDKKXRLAGRAGDRGLGVESAKGPKVMVIEMEL
220 230 240 250 260 270
>>NP_005788 (OMIM: 604873) myelin protein zero-like prot (215 aa)
initn: 295 init1: 200 opt: 349 Z-score: 375.3 bits: 76.8 E(85289): 3.6e-14
Smith-Waterman score: 349; 37.2% identity (66.3% similar) in 172 aa overlap (28-194:14-181)
10 20 30 40 50
pF1KB5 MAASAGAGAVIAAPDSRRWLWSVLAAALGL-LTA--GVSALEVYTPKEIFVANGTQGKLT
::. ::: ..:.:.:: . . ..:::...:
NP_005 MYGKSSTRAVLLLLGIQLTALWPIAAVEIYTSRVLEAVNGTDARLK
10 20 30 40
60 70 80 90 100 110
pF1KB5 CKFKSTSTTGGLTSVSWSFQPE--GADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDK
: :.: . .: .:.:.:.: : . : ..: . : . : ::::.:: :. ..
NP_005 CTFSSFAPVGDALTVTWNFRPLDGGPEQFVFYYHIDPFQPMSGR---FKDRVSWDGNPER
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB5 KDASINIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKENLPVFPVWVVVGIVTAV
:::: . ..:: :::: :.::::::. :.::: ::. . . .....: .:
NP_005 YDASILLWKLQFDDNGTYTCQVKNPPDVDGVIGEIRLSVVHTVRFSEIH-FLALAIGSAC
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB5 VLGLTLLISMILAVLYRRKNSKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLPSGSH
.: . ..: ..: ::.:
NP_005 ALMIIIVIVVVLFQHYRKKRWAERAHKVVEIKSKEEERLNQEKKVSVYLEDTD
170 180 190 200 210
>>NP_658911 (OMIM: 604873) myelin protein zero-like prot (215 aa)
initn: 295 init1: 200 opt: 349 Z-score: 375.3 bits: 76.8 E(85289): 3.6e-14
Smith-Waterman score: 349; 37.2% identity (66.3% similar) in 172 aa overlap (28-194:14-181)
10 20 30 40 50
pF1KB5 MAASAGAGAVIAAPDSRRWLWSVLAAALGL-LTA--GVSALEVYTPKEIFVANGTQGKLT
::. ::: ..:.:.:: . . ..:::...:
NP_658 MYGKSSTRAVLLLLGIQLTALWPIAAVEIYTSRVLEAVNGTDARLK
10 20 30 40
60 70 80 90 100 110
pF1KB5 CKFKSTSTTGGLTSVSWSFQPE--GADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDK
: :.: . .: .:.:.:.: : . : ..: . : . : ::::.:: :. ..
NP_658 CTFSSFAPVGDALTVTWNFRPLDGGPEQFVFYYHIDPFQPMSGR---FKDRVSWDGNPER
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB5 KDASINIENMQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKENLPVFPVWVVVGIVTAV
:::: . ..:: :::: :.::::::. :.::: ::. . . .....: .:
NP_658 YDASILLWKLQFDDNGTYTCQVKNPPDVDGVIGEIRLSVVHTVRFSEIH-FLALAIGSAC
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB5 VLGLTLLISMILAVLYRRKNSKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLPSGSH
.: . ..: ..: ::.:
NP_658 ALMIIIVIVVVLFQHYRKKRWAERAHKVVEIKSKEEERLNQEKKVSVYLEDTD
170 180 190 200 210
>>XP_006718838 (OMIM: 611707) PREDICTED: myelin protein (217 aa)
initn: 292 init1: 174 opt: 307 Z-score: 331.7 bits: 68.8 E(85289): 9.8e-12
Smith-Waterman score: 307; 35.1% identity (60.9% similar) in 174 aa overlap (35-204:11-182)
10 20 30 40 50 60
pF1KB5 AGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTS
: .::. . .. : . :: : :::::
XP_006 MSGFGRRVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTS
10 20 30 40
70 80 90 100 110 120
pF1KB5 TTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASINIEN
. ...:...: ... :::.:::.. : : . :.:::::.:.. : ::::.: :
XP_006 DVTDKLTIDWTYRPPSSSHTVSIFHYQSFQ-YPTTAGTFRDRISWVGNVYKGDASISISN
50 60 70 80 90
130 140 150 160 170 180
pF1KB5 MQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKENLPVFP----VWVVVGIVTAVVLGLT
. :::. : ::::::. . .: :.:. .. . ..: . .:::..:
XP_006 PTIKDNGTFSCAVKNPPDVHHNIPMTELTVTERGFGTMLSSVALLSILVFVPSAVVVAL-
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 LLISMILAVLYRRKNSKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLPSGSHQGPVI
::. : . .: :. : :
XP_006 LLVRMGRKAAGLKKRSRSGYKKSSIEVSDDTDQEEEEACMARLCVRCAECLDSDYEETY
160 170 180 190 200 210
>>XP_016872793 (OMIM: 611707) PREDICTED: myelin protein (219 aa)
initn: 292 init1: 174 opt: 307 Z-score: 331.6 bits: 68.8 E(85289): 9.9e-12
Smith-Waterman score: 307; 35.1% identity (60.9% similar) in 174 aa overlap (35-204:13-184)
10 20 30 40 50 60
pF1KB5 AGAGAVIAAPDSRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTS
: .::. . .. : . :: : :::::
XP_016 MMQPCYTWGVYIVFSLEIRADAHVRGYVGEKIKLKCTFKSTS
10 20 30 40
70 80 90 100 110 120
pF1KB5 TTGGLTSVSWSFQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASINIEN
. ...:...: ... :::.:::.. : : . :.:::::.:.. : ::::.: :
XP_016 DVTDKLTIDWTYRPPSSSHTVSIFHYQSFQ-YPTTAGTFRDRISWVGNVYKGDASISISN
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 MQFIHNGTYICDVKNPPDIVVQPGHIRLYVVEKENLPVFP----VWVVVGIVTAVVLGLT
. :::. : ::::::. . .: :.:. .. . ..: . .:::..:
XP_016 PTIKDNGTFSCAVKNPPDVHHNIPMTELTVTERGFGTMLSSVALLSILVFVPSAVVVAL-
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 LLISMILAVLYRRKNSKRDYTGCSTSESLSPVKQAPRKSPSDTEGLVKSLPSGSHQGPVI
::. : . .: :. : :
XP_016 LLVRMGRKAAGLKKRSRSGYKKSSIEVSDDTDQEEEEACMARLCVRCAECLDSDYEETY
170 180 190 200 210
269 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:08:27 2016 done: Sat Nov 5 13:08:28 2016
Total Scan time: 7.150 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]