Result of FASTA (omim) for
pF1KB5580
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5580, 615 aa
1>>>pF1KB5580 615 - 615 aa - 615 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1548+/-0.000423; mu= 15.7204+/- 0.026
mean_var=105.5358+/-22.590, 0's: 0 Z-trim(112.6): 411 B-trim: 0 in 0/55
Lambda= 0.124846
statistics sampled from 21178 (21607) to 21178 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.253), width: 16
Scan time: 10.890
The best scores are: opt bits E(85289)
XP_011532368 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 3988 729.7 7.1e-210
XP_011532367 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 3988 729.7 7.1e-210
NP_003289 (OMIM: 601426) nuclear receptor subfamil ( 615) 3988 729.7 7.1e-210
XP_011532366 (OMIM: 601426) PREDICTED: nuclear rec ( 615) 3988 729.7 7.1e-210
XP_011532361 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 3988 729.7 7.4e-210
XP_016862608 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 3988 729.7 7.4e-210
XP_016862607 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 3988 729.7 7.4e-210
XP_011532363 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 3988 729.7 7.4e-210
XP_011532360 (OMIM: 601426) PREDICTED: nuclear rec ( 648) 3988 729.7 7.4e-210
NP_001278623 (OMIM: 601426) nuclear receptor subfa ( 596) 3724 682.1 1.4e-195
XP_016862609 (OMIM: 601426) PREDICTED: nuclear rec ( 596) 3724 682.1 1.4e-195
XP_011532365 (OMIM: 601426) PREDICTED: nuclear rec ( 629) 3724 682.1 1.5e-195
XP_005269190 (OMIM: 601529) PREDICTED: nuclear rec ( 598) 1648 308.2 5.2e-83
NP_003288 (OMIM: 601529) nuclear receptor subfamil ( 603) 1470 276.2 2.3e-73
XP_006719648 (OMIM: 601529) PREDICTED: nuclear rec ( 426) 1362 256.6 1.3e-67
NP_001027458 (OMIM: 601529) nuclear receptor subfa ( 467) 1060 202.2 3.3e-51
NP_001120834 (OMIM: 601529) nuclear receptor subfa ( 483) 1060 202.2 3.4e-51
XP_006719647 (OMIM: 601529) PREDICTED: nuclear rec ( 557) 1060 202.3 3.7e-51
XP_011537018 (OMIM: 601529) PREDICTED: nuclear rec ( 521) 1056 201.5 5.9e-51
XP_011537019 (OMIM: 601529) PREDICTED: nuclear rec ( 507) 866 167.3 1.1e-40
XP_016865286 (OMIM: 132890,615722) PREDICTED: COUP ( 273) 494 100.1 1.1e-20
NP_001138628 (OMIM: 107773,615779) COUP transcript ( 261) 487 98.8 2.4e-20
NP_001138629 (OMIM: 107773,615779) COUP transcript ( 261) 487 98.8 2.4e-20
NP_001138627 (OMIM: 107773,615779) COUP transcript ( 281) 487 98.8 2.6e-20
NP_008848 (OMIM: 180247) retinoic acid receptor RX ( 463) 486 98.8 4.3e-20
NP_001243500 (OMIM: 180247) retinoic acid receptor ( 340) 462 94.4 6.8e-19
NP_001243499 (OMIM: 180247) retinoic acid receptor ( 340) 462 94.4 6.8e-19
NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 458 93.7 1.2e-18
NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 458 93.8 1.4e-18
NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 458 93.8 1.4e-18
NP_005225 (OMIM: 132880) nuclear receptor subfamil ( 404) 457 93.6 1.4e-18
NP_066285 (OMIM: 107773,615779) COUP transcription ( 414) 449 92.1 4e-18
NP_005645 (OMIM: 132890,615722) COUP transcription ( 423) 441 90.7 1.1e-17
NP_001278918 (OMIM: 180246) retinoic acid receptor ( 347) 425 87.7 7e-17
XP_016866665 (OMIM: 180246) PREDICTED: retinoic ac ( 414) 425 87.8 8e-17
XP_011513098 (OMIM: 180246) PREDICTED: retinoic ac ( 420) 425 87.8 8.1e-17
XP_005249335 (OMIM: 180246) PREDICTED: retinoic ac ( 441) 425 87.8 8.4e-17
NP_001138773 (OMIM: 180240,612376) retinoic acid r ( 462) 425 87.8 8.7e-17
XP_011523397 (OMIM: 180240,612376) PREDICTED: reti ( 462) 425 87.8 8.7e-17
XP_005257611 (OMIM: 180240,612376) PREDICTED: reti ( 462) 425 87.8 8.7e-17
NP_000955 (OMIM: 180240,612376) retinoic acid rece ( 462) 425 87.8 8.7e-17
XP_005257610 (OMIM: 180240,612376) PREDICTED: reti ( 462) 425 87.8 8.7e-17
NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 425 87.9 9.7e-17
NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 425 87.9 9.8e-17
NP_849181 (OMIM: 125850,125853,600281,616026) hepa ( 417) 414 85.8 3.2e-16
NP_001277145 (OMIM: 180220,615524) retinoic acid r ( 455) 414 85.9 3.4e-16
NP_849180 (OMIM: 125850,125853,600281,616026) hepa ( 464) 414 85.9 3.5e-16
NP_000448 (OMIM: 125850,125853,600281,616026) hepa ( 474) 414 85.9 3.5e-16
NP_001274113 (OMIM: 125850,125853,600281,616026) h ( 392) 412 85.4 3.9e-16
NP_001025175 (OMIM: 125850,125853,600281,616026) h ( 395) 412 85.5 3.9e-16
>>XP_011532368 (OMIM: 601426) PREDICTED: nuclear recepto (615 aa)
initn: 3988 init1: 3988 opt: 3988 Z-score: 3888.9 bits: 729.7 E(85289): 7.1e-210
Smith-Waterman score: 3988; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:1-615)
10 20 30 40 50 60
pF1KB5 MTSPSPRIQIISTDSAVASPQRIQGSEPASGPLSVFTSLNKEKIVTDQQTGQKIQIVTAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTSPSPRIQIISTDSAVASPQRIQGSEPASGPLSVFTSLNKEKIVTDQQTGQKIQIVTAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 DASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 IATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 TSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 SIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 RSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILK
550 560 570 580 590 600
610
pF1KB5 METAEYNGQITGASL
:::::::::::::::
XP_011 METAEYNGQITGASL
610
>>XP_011532367 (OMIM: 601426) PREDICTED: nuclear recepto (615 aa)
initn: 3988 init1: 3988 opt: 3988 Z-score: 3888.9 bits: 729.7 E(85289): 7.1e-210
Smith-Waterman score: 3988; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:1-615)
10 20 30 40 50 60
pF1KB5 MTSPSPRIQIISTDSAVASPQRIQGSEPASGPLSVFTSLNKEKIVTDQQTGQKIQIVTAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTSPSPRIQIISTDSAVASPQRIQGSEPASGPLSVFTSLNKEKIVTDQQTGQKIQIVTAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 DASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 IATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 TSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 SIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 RSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILK
550 560 570 580 590 600
610
pF1KB5 METAEYNGQITGASL
:::::::::::::::
XP_011 METAEYNGQITGASL
610
>>NP_003289 (OMIM: 601426) nuclear receptor subfamily 2 (615 aa)
initn: 3988 init1: 3988 opt: 3988 Z-score: 3888.9 bits: 729.7 E(85289): 7.1e-210
Smith-Waterman score: 3988; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:1-615)
10 20 30 40 50 60
pF1KB5 MTSPSPRIQIISTDSAVASPQRIQGSEPASGPLSVFTSLNKEKIVTDQQTGQKIQIVTAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MTSPSPRIQIISTDSAVASPQRIQGSEPASGPLSVFTSLNKEKIVTDQQTGQKIQIVTAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 DASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 IATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 TSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 SIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 RSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILK
550 560 570 580 590 600
610
pF1KB5 METAEYNGQITGASL
:::::::::::::::
NP_003 METAEYNGQITGASL
610
>>XP_011532366 (OMIM: 601426) PREDICTED: nuclear recepto (615 aa)
initn: 3988 init1: 3988 opt: 3988 Z-score: 3888.9 bits: 729.7 E(85289): 7.1e-210
Smith-Waterman score: 3988; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:1-615)
10 20 30 40 50 60
pF1KB5 MTSPSPRIQIISTDSAVASPQRIQGSEPASGPLSVFTSLNKEKIVTDQQTGQKIQIVTAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTSPSPRIQIISTDSAVASPQRIQGSEPASGPLSVFTSLNKEKIVTDQQTGQKIQIVTAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 DASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVER
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCII
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 IATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 TSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 SIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 RSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILK
550 560 570 580 590 600
610
pF1KB5 METAEYNGQITGASL
:::::::::::::::
XP_011 METAEYNGQITGASL
610
>>XP_011532361 (OMIM: 601426) PREDICTED: nuclear recepto (648 aa)
initn: 3988 init1: 3988 opt: 3988 Z-score: 3888.6 bits: 729.7 E(85289): 7.4e-210
Smith-Waterman score: 3988; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:34-648)
10 20 30
pF1KB5 MTSPSPRIQIISTDSAVASPQRIQGSEPAS
::::::::::::::::::::::::::::::
XP_011 NMEGLVQHRVGTQQVAEVTRTQTSRPESPGMTSPSPRIQIISTDSAVASPQRIQGSEPAS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPET
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 SSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 VSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSER
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 KPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQP
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB5 LIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB5 AFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB5 TMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGL
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB5 AQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYE
490 500 510 520 530 540
520 530 540 550 560 570
pF1KB5 YAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALR
550 560 570 580 590 600
580 590 600 610
pF1KB5 LMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 LMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL
610 620 630 640
>>XP_016862608 (OMIM: 601426) PREDICTED: nuclear recepto (648 aa)
initn: 3988 init1: 3988 opt: 3988 Z-score: 3888.6 bits: 729.7 E(85289): 7.4e-210
Smith-Waterman score: 3988; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:34-648)
10 20 30
pF1KB5 MTSPSPRIQIISTDSAVASPQRIQGSEPAS
::::::::::::::::::::::::::::::
XP_016 NMEGLVQHRVGTQQVAEVTRTQTSRPESPGMTSPSPRIQIISTDSAVASPQRIQGSEPAS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPET
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 SSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 VSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSER
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 KPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQP
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB5 LIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB5 AFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB5 TMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGL
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB5 AQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYE
490 500 510 520 530 540
520 530 540 550 560 570
pF1KB5 YAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALR
550 560 570 580 590 600
580 590 600 610
pF1KB5 LMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 LMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL
610 620 630 640
>>XP_016862607 (OMIM: 601426) PREDICTED: nuclear recepto (648 aa)
initn: 3988 init1: 3988 opt: 3988 Z-score: 3888.6 bits: 729.7 E(85289): 7.4e-210
Smith-Waterman score: 3988; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:34-648)
10 20 30
pF1KB5 MTSPSPRIQIISTDSAVASPQRIQGSEPAS
::::::::::::::::::::::::::::::
XP_016 NMEGLVQHRVGTQQVAEVTRTQTSRPESPGMTSPSPRIQIISTDSAVASPQRIQGSEPAS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPET
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 SSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 VSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSER
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 KPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQP
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB5 LIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB5 AFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB5 TMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGL
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB5 AQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYE
490 500 510 520 530 540
520 530 540 550 560 570
pF1KB5 YAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALR
550 560 570 580 590 600
580 590 600 610
pF1KB5 LMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 LMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL
610 620 630 640
>>XP_011532363 (OMIM: 601426) PREDICTED: nuclear recepto (648 aa)
initn: 3988 init1: 3988 opt: 3988 Z-score: 3888.6 bits: 729.7 E(85289): 7.4e-210
Smith-Waterman score: 3988; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:34-648)
10 20 30
pF1KB5 MTSPSPRIQIISTDSAVASPQRIQGSEPAS
::::::::::::::::::::::::::::::
XP_011 NMEGLVQHRVGTQQVAEVTRTQTSRPESPGMTSPSPRIQIISTDSAVASPQRIQGSEPAS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPET
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 SSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 VSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSER
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 KPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQP
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB5 LIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB5 AFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB5 TMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGL
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB5 AQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYE
490 500 510 520 530 540
520 530 540 550 560 570
pF1KB5 YAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALR
550 560 570 580 590 600
580 590 600 610
pF1KB5 LMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 LMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL
610 620 630 640
>>XP_011532360 (OMIM: 601426) PREDICTED: nuclear recepto (648 aa)
initn: 3988 init1: 3988 opt: 3988 Z-score: 3888.6 bits: 729.7 E(85289): 7.4e-210
Smith-Waterman score: 3988; 100.0% identity (100.0% similar) in 615 aa overlap (1-615:34-648)
10 20 30
pF1KB5 MTSPSPRIQIISTDSAVASPQRIQGSEPAS
::::::::::::::::::::::::::::::
XP_011 NMEGLVQHRVGTQQVAEVTRTQTSRPESPGMTSPSPRIQIISTDSAVASPQRIQGSEPAS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPLSVFTSLNKEKIVTDQQTGQKIQIVTAVDASGSPKQQFILTSPDGAGTGKVILASPET
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 SSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSAKQLIFTTSDNLVPGRIQIVTDSASVERLLGKTDVQRPQVVEYCVVCGDKASGRHYGA
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 VSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKKCLEMGMKMESVQSER
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 KPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPFDVQREKPSNCAASTEKIYIRKDLRSPLIATPTFVADKDGARQTGLLDPGMLVNIQQP
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB5 LIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIREDGTVLLATDSKAETSQGALGTLANVVTSLANLSESLNNGDTSEIQPEDQSASEITR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB5 AFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFDTLAKALNTTDSSSSPSLADGIDTSGGGSIHVISRDQSTPIIEVEGPLLSDTHVTFKL
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB5 TMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGL
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB5 AQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYE
490 500 510 520 530 540
520 530 540 550 560 570
pF1KB5 YAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALR
550 560 570 580 590 600
580 590 600 610
pF1KB5 LMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 LMSSNITEELFFTGLIGNVSIDSIIPYILKMETAEYNGQITGASL
610 620 630 640
>>NP_001278623 (OMIM: 601426) nuclear receptor subfamily (596 aa)
initn: 3720 init1: 3720 opt: 3724 Z-score: 3632.1 bits: 682.1 E(85289): 1.4e-195
Smith-Waterman score: 3820; 96.9% identity (96.9% similar) in 615 aa overlap (1-615:1-596)
10 20 30 40 50 60
pF1KB5 MTSPSPRIQIISTDSAVASPQRIQGSEPASGPLSVFTSLNKEKIVTDQQTGQKIQIVTAV
:::::::::::::::::::::::: :::::::::::::::::
NP_001 MTSPSPRIQIISTDSAVASPQRIQ-------------------IVTDQQTGQKIQIVTAV
10 20 30 40
70 80 90 100 110 120
pF1KB5 DASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DASGSPKQQFILTSPDGAGTGKVILASPETSSAKQLIFTTSDNLVPGRIQIVTDSASVER
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 LLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLGKTDVQRPQVVEYCVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCII
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 NKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NKHHRNRCQFCRLKKCLEMGMKMESVQSERKPFDVQREKPSNCAASTEKIYIRKDLRSPL
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 IATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IATPTFVADKDGARQTGLLDPGMLVNIQQPLIREDGTVLLATDSKAETSQGALGTLANVV
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 TSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSLANLSESLNNGDTSEIQPEDQSASEITRAFDTLAKALNTTDSSSSPSLADGIDTSGGG
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 SIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIHVISRDQSTPIIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWA
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 RSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS
410 420 430 440 450 460
490 500 510 520 530 540
pF1KB5 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKA
470 480 490 500 510 520
550 560 570 580 590 600
pF1KB5 QMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILK
530 540 550 560 570 580
610
pF1KB5 METAEYNGQITGASL
:::::::::::::::
NP_001 METAEYNGQITGASL
590
615 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 17:39:21 2016 done: Thu Nov 3 17:39:23 2016
Total Scan time: 10.890 Total Display time: 0.190
Function used was FASTA [36.3.4 Apr, 2011]