FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5360, 368 aa
  1>>>pF1KB5360 368 - 368 aa - 368 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0244+/-0.000988; mu= 7.0263+/- 0.058
 mean_var=104.1073+/-22.492, 0's: 0 Z-trim(107.3): 121  B-trim: 334 in 1/49
 Lambda= 0.125700
 statistics sampled from 9372 (9517) to 9372 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.292), width:  16
 Scan time:  2.670

The best scores are:                                      opt bits E(32554)
CCDS13458.1 RAE1 gene_id:8480|Hs108|chr20          ( 368) 2574 477.6 7.3e-135
CCDS31306.1 BUB3 gene_id:9184|Hs108|chr10          ( 326)  664 131.2 1.2e-30
CCDS7635.1 BUB3 gene_id:9184|Hs108|chr10           ( 328)  664 131.2 1.2e-30


>>CCDS13458.1 RAE1 gene_id:8480|Hs108|chr20               (368 aa)
 initn: 2574 init1: 2574 opt: 2574  Z-score: 2534.7  bits: 477.6 E(32554): 7.3e-135
Smith-Waterman score: 2574; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAE
              310       320       330       340       350       360

               
pF1KB5 ELKPRNKK
       ::::::::
CCDS13 ELKPRNKK
               

>>CCDS31306.1 BUB3 gene_id:9184|Hs108|chr10               (326 aa)
 initn: 594 init1: 211 opt: 664  Z-score: 663.6  bits: 131.2 E(32554): 1.2e-30
Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (31-366:6-325)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
                                     ...... :.:.:. ..::: :  ..::...
CCDS31                          MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
                                        10        20          30   

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       :: ..:: ..:  ... . : :  ::: ::: :   : ....... :.  :: ::...: 
CCDS31 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
            40        50           60         70        80         

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
         .. ::::.. ...   :. . ..:::::.:.:.:: :.     ... ::. :  .:  
CCDS31 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
      90       100         110       120       130       140       

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
          .:.:: : ..:..:.:.    .: :: ::.: ::.  : .::    :..:.::::::
CCDS31 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
       150       160       170       180       190           200   

               250       260       270       280       290         
pF1KB5 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
       :..:..: :.  : ...::::: . .:    ..:: ::.:.:: .:.:.:: ::::  ..
CCDS31 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
           210       220       230          240       250       260

     300       310       320       330       340       350         
pF1KB5 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
       ::   . .:   ..    :..  :...:. .: :::: . .  .  .:.  . ::.:...
CCDS31 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
              270       280       290        300         310       

     360         
pF1KB5 E-ELKPRNKK
       . : ::..  
CCDS31 DAETKPKST 
       320       

>>CCDS7635.1 BUB3 gene_id:9184|Hs108|chr10                (328 aa)
 initn: 594 init1: 211 opt: 664  Z-score: 663.6  bits: 131.2 E(32554): 1.2e-30
Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (31-366:6-325)

               10        20        30        40        50        60
pF1KB5 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
                                     ...... :.:.:. ..::: :  ..::...
CCDS76                          MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
                                        10        20          30   

               70        80        90       100       110       120
pF1KB5 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
       :: ..:: ..:  ... . : :  ::: ::: :   : ....... :.  :: ::...: 
CCDS76 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
            40        50           60         70        80         

              130       140       150       160       170       180
pF1KB5 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
         .. ::::.. ...   :. . ..:::::.:.:.:: :.     ... ::. :  .:  
CCDS76 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
      90       100         110       120       130       140       

              190       200       210       220       230       240
pF1KB5 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
          .:.:: : ..:..:.:.    .: :: ::.: ::.  : .::    :..:.::::::
CCDS76 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
       150       160       170       180       190           200   

               250       260       270       280       290         
pF1KB5 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
       :..:..: :.  : ...::::: . .:    ..:: ::.:.:: .:.:.:: ::::  ..
CCDS76 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
           210       220       230          240       250       260

     300       310       320       330       340       350         
pF1KB5 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
       ::   . .:   ..    :..  :...:. .: :::: . .  .  .:.  . ::.:...
CCDS76 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
              270       280       290        300         310       

     360          
pF1KB5 E-ELKPRNKK 
       . : ::..   
CCDS76 DAETKPKSPCT
       320        




368 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:29:56 2016 done: Sat Nov  5 12:29:57 2016
 Total Scan time:  2.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]