FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5349, 376 aa
  1>>>pF1KB5349 376 - 376 aa - 376 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5299+/-0.000902; mu= 15.0801+/- 0.054
 mean_var=62.7174+/-12.733, 0's: 0 Z-trim(104.6): 15  B-trim: 3 in 1/50
 Lambda= 0.161950
 statistics sampled from 7956 (7964) to 7956 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.245), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS7692.1 PSMD13 gene_id:5719|Hs108|chr11         ( 376) 2468 585.4 2.7e-167
CCDS44504.1 PSMD13 gene_id:5719|Hs108|chr11        ( 378) 2170 515.8 2.5e-146


>>CCDS7692.1 PSMD13 gene_id:5719|Hs108|chr11              (376 aa)
 initn: 2468 init1: 2468 opt: 2468  Z-score: 3116.9  bits: 585.4 E(32554): 2.7e-167
Smith-Waterman score: 2468; 99.7% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KB5 MKDVPGFLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV
              310       320       330       340       350       360

              370      
pF1KB5 KSMEMLVEHQAHDILT
       ::::::::::::::::
CCDS76 KSMEMLVEHQAHDILT
              370      

>>CCDS44504.1 PSMD13 gene_id:5719|Hs108|chr11             (378 aa)
 initn: 2199 init1: 1990 opt: 2170  Z-score: 2740.6  bits: 515.8 E(32554): 2.5e-146
Smith-Waterman score: 2170; 89.9% identity (94.2% similar) in 378 aa overlap (1-376:1-378)

               10        20        30          40        50        
pF1KB5 MKDVPGFLQQSQSSGPGQPAVWHRLEELYTKKLWHQLT--LQVLDFVQDPCFAQGDGLIK
       ::::::::::::.::::::::::::::::::.. . :.  :..   ...    ... .  
CCDS44 MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKNFMKTLSVNLNTGKSLSSVFHFENECIDA
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB5 LYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAI
          .  . :  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RRCSKAGGFYFRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAI
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB5 GALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALR
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KB5 FLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLY
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KB5 AFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAK
              250       260       270       280       290       300

      300       310       320       330       340       350        
pF1KB5 SAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCT
              310       320       330       340       350       360

      360       370      
pF1KB5 DVKSMEMLVEHQAHDILT
       ::::::::::::::::::
CCDS44 DVKSMEMLVEHQAHDILT
              370        




376 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:29:22 2016 done: Sat Nov  5 12:29:23 2016
 Total Scan time:  2.290 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]