Result of FASTA (omim) for
pF1KB5209
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5209, 527 aa
1>>>pF1KB5209 527 - 527 aa - 527 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3995+/-0.000373; mu= 19.2560+/- 0.023
mean_var=86.3698+/-17.824, 0's: 0 Z-trim(113.9): 33 B-trim: 38 in 1/54
Lambda= 0.138005
statistics sampled from 23377 (23404) to 23377 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.635), E-opt: 0.2 (0.274), width: 16
Scan time: 10.210
The best scores are: opt bits E(85289)
NP_001035930 (OMIM: 176801,249900,610539,611721,61 ( 527) 3608 728.6 1.1e-209
NP_001035931 (OMIM: 176801,249900,610539,611721,61 ( 526) 3589 724.8 1.6e-208
NP_002769 (OMIM: 176801,249900,610539,611721,61172 ( 524) 3570 721.0 2.2e-207
>>NP_001035930 (OMIM: 176801,249900,610539,611721,611722 (527 aa)
initn: 3608 init1: 3608 opt: 3608 Z-score: 3885.2 bits: 728.6 E(85289): 1.1e-209
Smith-Waterman score: 3608; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)
10 20 30 40 50 60
pF1KB5 MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 CKNYISQYSEIAIQMMMHMQDQQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CKNYISQYSEIAIQMMMHMQDQQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 LVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEEC
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 QEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 YLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCL
430 440 450 460 470 480
490 500 510 520
pF1KB5 KIGACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIGACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN
490 500 510 520
>>NP_001035931 (OMIM: 176801,249900,610539,611721,611722 (526 aa)
initn: 1938 init1: 1848 opt: 3589 Z-score: 3864.8 bits: 724.8 E(85289): 1.6e-208
Smith-Waterman score: 3589; 99.8% identity (99.8% similar) in 527 aa overlap (1-527:1-526)
10 20 30 40 50 60
pF1KB5 MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 CKNYISQYSEIAIQMMMHMQDQQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALE
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 CKNYISQYSEIAIQMMMHM-DQQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALE
250 260 270 280 290
310 320 330 340 350 360
pF1KB5 LVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEEC
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 QEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVG
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB5 YLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCL
420 430 440 450 460 470
490 500 510 520
pF1KB5 KIGACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIGACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN
480 490 500 510 520
>>NP_002769 (OMIM: 176801,249900,610539,611721,611722) p (524 aa)
initn: 1941 init1: 1828 opt: 3570 Z-score: 3844.4 bits: 721.0 E(85289): 2.2e-207
Smith-Waterman score: 3570; 99.4% identity (99.4% similar) in 527 aa overlap (1-527:1-524)
10 20 30 40 50 60
pF1KB5 MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 CKNYISQYSEIAIQMMMHMQDQQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALE
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
NP_002 CKNYISQYSEIAIQMMMHMQ---PKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALE
250 260 270 280 290
310 320 330 340 350 360
pF1KB5 LVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEEC
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 QEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVG
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB5 YLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCL
420 430 440 450 460 470
490 500 510 520
pF1KB5 KIGACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN
:::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KIGACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN
480 490 500 510 520
527 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:19:04 2016 done: Fri Nov 4 22:19:05 2016
Total Scan time: 10.210 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]